G1935


Basic Information

Item Value
gene id G1935
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11381872 ~ 11386054 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2311
CGGAAATAAATGGAATCTGTTTCAGCTTAAACTGTGTTACAGGCGAATCTACGGTTTCGGAAATGCAGGTAGCCAGCTTGACTTGGTATAAAAGGCGGAGCGCGGAGCCCCTCGGTCTCAGTGTGCGGAGTCCGGCGTGTGTTGAGTATGAGCTCCCGGCGCCTGCAGGGTTATTATCCGCTGTGAGTTGTAATAGTTTGTTGTCGATCATAATGAACATGCATTTTTGTAGTCTTATGTTAACGTTTTAATTTCGGATATCCGAAGTTCTGTTTAGTCTAGTATTCTGACGAGAAACCCCACCTGTTTGGTTGAAGTGTCTGTGCATACGACCTTCTTTAATCGTGTCATTTTAATGTAGAATCGCATGATTATCTTCACTGACGTGGGTCTTGATCTCGCAAAAGACGCATTTGATCTGCAGATGGGTAAACCTTAAAATGCAAGAATGGGGAGACTGCATTCAGCAATCGGGAAGCGCCTGTAAAAAGCTGTTGCTAAACGTATAGTAGCTGGAAACGATCAGTCTGCGCCCGGTGTGGTCAGTCCTTTCATTGCATCACGAAACCATGAGGCGCAAACTGCGAGGCTGCGGTGAAGGGGGGAGGCAAACGGGAGGGTGAACCAACGCAGGAAAGAAATGCAAACTTTAAAACAGATTGCCTGTGTCTAAAATACTGCCCAAGAAAAGTAATCCTTGGTGAGATGGTGCTGGGTGTGCAAAACCCTGCAGATCAGAGCAAGGAATGGTAAGCCTTGGCAGGATGGTGCTGGGTGTTCAAAACCCTGCAGATCGGCCCAATAAACTGTAATCCTTGGTGAGATGGTGCTGGGTGTGCAAAACCCTGCCGATCAGAGAAGGAACCTGTAAATGGGTGGTTGGTGGACTGTTtgatgccccccccccccttctcctcATTAACCCATAAAAGGTTCTGGGCTAACGATGTCAAGTCCTGAAGAATACTGGATGTTTTGTGGAAAACTGTCATGAAGCTGCACCATTTTGGTTATTTAAGTGTTCACGAggcaataaactatttactgcTTTCACTTCTTCCTTCACTTGATTTTT
>TU2312
CGGAAATAAATGGAATCTGTTTCAGCTTAAACTGTGTTACAGGCGAATCTACGGTTTCGGAAATGCAGGTAGCCAGCTTGACTTGGTATAAAAGGCGGAGCGCGGAGCCCCTCGGTCTCAGTGTGCGGAGTCCGGCGTGTGTTGAGTATGAGCTCCCGGCGCCTGCAGGGTTATTATCCGCTACGCATTTGATCTGCAGATGGGTAAACCTTAAAATGCAAGAATGGGGAGACTGCATTCAGCAATCGGGAAGCGCCTGTAAAAAGCTGTTGCTAAACGTATAGTAGCTGGAAACGATCAGTCTGCGCCCGGTGTGGTCAGTCCTTTCATTGCATCACGAAACCATGAGGCGCAAACTGCGAGGCTGCGGTGAAGGGGGGAGGCAAACGGGAGGGTGAACCAACGCAGGAAAGAAATGCAAACTTTAAAACAGATTGCCTGTGTCTAAAATACTGCCCAAGAAAAGTAATCCTTGGTGAGATGGTGCTGGGTGTGCAAAACCCTGCAGATCAGAGCAAGGAATGGTAAGCCTTGGCAGGATGGTGCTGGGTGTTCAAAACCCTGCAGATCGGCCCAATAAACTGTAATCCTTGGTGAGATGGTGCTGGGTGTGCAAAACCCTGCCGATCAGAGAAGGAACCTGTAAATGGGTGGTTGGTGGACTGTTtgatgccccccccccccttctcctcATTAACCCATAAAAGGTTCTGGGCTAACGATGTCAAGTCCTGAAGAATACTGGATGTTTTGTGGAAAACTGTCATGAAGCTGCACCATTTTGGTTATTTAAGTGTTCACGAggcaataaactatttactgcTTTCACTTCTTCCTTCACTTGATTTTT
>TU2313
CGGAAATAAATGGAATCTGTTTCAGCTTAAACTGTGTTACAGGCGAATCTACGGTTTCGGAAATGCAGGTAGCCAGCTTGACTTGGTATAAAAGGCGGAGCGCGGAGCCCCTCGGTCTCAGTGTGCGGAGTCCGGCGTGTGTTGAGTATGAGCTCCCGGCGCCTGCAGGGTTATTATCCGCTAATCGCATGATTATCTTCACTGACGTGGGTCTTGATCTCGCAAAAGACGCATTTGATCTGCAGATGGGTAAACCTTAAAATGCAAGAATGGGGAGACTGCATTCAGCAATCGGGAAGCGCCTGTAAAAAGCTGTTGCTAAACGTATAGTAGCTGGAAACGATCAGTCTGCGCCCGGTGTGGTCAGTCCTTTCATTGCATCACGAAACCATGAGGCGCAAACTGCGAGGCTGCGGTGAAGGGGGGAGGCAAACGGGAGGGTGAACCAACGCAGGAAAGAAATGCAAACTTTAAAAATTGCCTGTGTCTAAAATACTGCCCAAGAAAAGTAATCCTTGGTGAGATGGTGCTGGGTGTGCAAAACCCTGCAGATCAGAGCAAGGAATGGTAAGCCTTGGCAGGATGGTGCTGGGTGTTCAAAACCCTGCAGATCGGCCCAATAAACTGTAATCCTTGGTGAGATGGTGCTGGGTGTGCAAAACCCTGCCGATCAGAGAAGGAACCTGTAAATGGGTGGTTGGTGGACTGTTtgatgccccccccccccttctcctcATTAACCCATAAAAGGTTCTGGGCTAACGATGTCAAGTCCTGAAGAATACTGGATGTTTTGTGGAAAACTGTCATGAAGCTGCACCATTTTGGTTATTTAAGTGTTCACGAggcaataaactatttactgcTTTCACTTCTTCCTTCACTTGATTTTT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03440 Homologous recombination
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU2311 True 1075 lncRNA 0.46 8 11381872 11386054
TU2312 False 850 lncRNA 0.49 9 11381872 11386054
TU2313 False 893 lncRNA 0.34 9 11381872 11386054

Neighbor

gene id symbol gene type direction distance location
AMCG00003601 NA coding downstream 3515 11372364 ~ 11378357 (-)
AMCG00003602 NA coding downstream 9815 11371764 ~ 11372057 (-)
AMCG00003600 NA coding downstream 15272 11345944 ~ 11366600 (-)
AMCG00003597 htr1b,LOC103360562 coding downstream 131625 11249087 ~ 11250247 (-)
AMCG00003596 impg1 coding downstream 198195 11150069 ~ 11183677 (-)
AMCG00003612 NA coding upstream 98956 11485010 ~ 11487557 (-)
AMCG00003610 NA coding upstream 142250 11528304 ~ 11542645 (-)
AMCG00003611 NA coding upstream 174508 11560562 ~ 11568281 (-)
AMCG00003613 cnr1,LOC104936193 coding upstream 189811 11575865 ~ 11577277 (-)
AMCG00003617 NA coding upstream 223109 11609163 ~ 11611680 (-)
G1856 NA non-coding downstream 330794 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 965985 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1529534 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1530445 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 2201891 9174855 ~ 9179981 (-)
G2044 NA non-coding upstream 346750 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 472867 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 640865 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 665191 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 681995 12068049 ~ 12068258 (-)
AMCG00003595 myo6,LOC106571274 other downstream 264967 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 425519 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 748760 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1503428 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1516223 9853199 ~ 9865649 (-)
AMCG00003618 NA other upstream 357935 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 535937 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 689265 12075319 ~ 12078152 (-)
G2236 NA other upstream 1648899 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1685742 13071796 ~ 13116660 (-)

Expression


Co-expression Network