G2044


Basic Information

Item Value
gene id G2044
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11732804 ~ 11863101 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2456
cagccAATAAGAAGGCCATTCTGGTGGTGATGCACCATACTCACAACCCGGAGCTCATTTTGGCTGAGAGCAGCTCTCTGGTGAAGAACAGGGCAAACATAGTGGGAACTGTGGACTGTCTGTTCCATGAGACTGTGGGATTACTGCAGTGTGGAGTCAACACCCAGGCTGTGAANNNNNNNNCTGaaattgtacaaatatatactCCCAGTCATACTCCAATATGTCATTCTCTAACCTTTATCCAAAAAATTTTGATTGTGATTTCAGCCAGTCTGTTACTTATCCTTCTTGTGATACTTGTATGTTATTTGgccaatttgttttgaaaacgttttttttgtttcctcttcACTATTCTCACCCAATCagctttaaatattatattctattcaatctagaaaaacaaagtattcagaaatatatatattccatgaagaactgcatttctttccccgTGTGTCTGTGAACGAGTTCACCGTCTTACTCTGTTACTATACTGGGCCAGAGTTCAACCCTGCTACCCAGATATGTTTCATTTAAGTTTGGTGcaataaattatgaatttacTATATACAACACCTCAGACCAAGGAATGTGGTAACAGTTTATTGAACCTCTGAAATAAACCAATAAGCAACAATCAAaaaaaaaaaaaaaaaagcattctttCTTACAAGCTGAATGGCAGCATTGATATCAatgagcagtttttttttttttttttatctaccCAATCGCATGCTCTGAATACTTCAAACGACTGCCAAGTGCAGAAGCCAAGAGTTTACAGAGGATTTGGGTTTGTCATAGTAACTGTGCACCACTCCATTATCCTGAACCAGCTACTTGATGAAAGAAACTACAGCTTAcgaaaaactaagaaaataaatgtaatttagccCAAAGACGGTTTAGAATCACGGTACATTGTGGAGATTGAcgacatacatacatttctctTATGTTTAAATGACAAAGAATAAGCTAGCATTTGTAATGGGCAAATCATGAAGTTATCAGAGCAACCTtatcaccccccaccccttaaACCATGAATACATAAGACGACGTTGCAGAGTCTTGAAATGTAACCGTTTACACTACAGCTACCTGATCCCAAACCAGGGTTGATTGCGGCATTGCGTAACTGTTCCATcggttaaacaaaaaaggactctacagtaaaaacaaacacaaacaaagaaaaaacaaacagacaacaaaaatatcaacaacaacacacccATGTGCATACTCCGTCACATTCCCACATATTTCTAAACCAAAAAACAGTAACCCATCTGGAAAATTACTATTTGGTTGGCAAATCTATTTCTGGCAAACAGTTTCAGTTTGtgtaaaaacaagtaaataaggaaacaaaatgtgagTTCATAGTAAAGTCTTTAGTATCTACACATATTTTTTGTGGTGTTCCTGTCAAAAGGAAGGGGGCTTTTCACCTCACACTTCcaatcaatacaaacacaaacatctttGCCCTTCTTCAGAGTACTGGATAATGATCAATAAGAATGAGGACTGCAAAtcaggttttaattttaaatcgaaataaatcaataatcatATTACAATCTGTTATTAAACAGTCCAGTATAGAGACAAAAATATCcttctgtgaaatgtatcttttatttCAAGATTAATATCATAATGTGGTTCCATAATCCAGCGTGTGTTGAAGGTATGATAACCTGTCATTCTACAGGTGACCAGATAcaaaatatagtatagtattaaGATTTACACACTCAAGCTAACAATATGAAATTCCTGACAAGGAGTTAGGTTTTTGTCAATATCTAAATCTTGATGAGAGCTGGTAATAACCTGGTAATGCAGATTAGTTTCCATACCTTGTtttcagtaattgttttttttaatgtttttttgttttatgctaaATTTTATTTGCTGTATGCTTTTTGACTAaacttgttttgaaataattgtaCCTTAAATAACCTGAGAAAACCATATTGcagttaataataatcacaaatggAATATAAATCTAGAACACTACAATGAAATAACTGCAAACAGACCAACGTTAAATATTCTTGGTGTTTTAGGGGCTATGAAACTACTGCATGGGAGCAATCTTTACAGCATTGTGTTTACCAATTAAGGACTACAGCCGATAGCCAGCAGACCCCCAAACCATTCTTCAGAAGCTCGTGGTCTTCCCCCTAGAGAGAAGCCTTGTTCAGGCAAATAAAAGGTTCATTTAGCTAGTTTGATCACATCTAACATTACAATCATATTAAGAGGAAGGTAGCATCACACAATAATCTGAGACAGCAAGCAAGGTGAACATCTGAATATCTCTTGTCCTGACTCTATTGTAACAATAATATCCAGTGGTTTAGGTTACATCTTTATGATAGCCAACCTGGGGCCGGCTTGGGATGTGTGGATTATGTTATGAAGCACTGACAATTGGTTATACACAACAGACTCCTTGTTATTTGGGAATACAATTCACTTCCAAAGCAAgatattaatgttaaaaatcACTTACACAAGTGTGGCAAGCACAACAGCTAAACTACCCGTTCATTTCCACTGCTCAACATTGATATTAGATGTGTTACATGATAACCACTGAATGCAGATGTTATCAATGTGAATACTGATAACGAAAACGAAAAAAAGGCACTTCAAATTAACTGCAAAACTTAATTAGCCATAATTTCATAATCCCATTGAATGctggaaaacacacaaatagataatattattattattattattattattattattaataataataataatgatgatgatgatgaataacCTAGTGGAATCTACTTATCTGAAGTTCCATTTAAGATTTattgtctgtctccctgtgtgtctgctaaaaaaatacatcaaaataaataaaatgagaaaaaatctTAATAAGGTTGACGAAATTAACGTTTGGCCACCTGGTAACATGTTTCCTTACATGTTAACTGTGGGACTCAATGATGGTATATTAGAGATCAGTGCTGAAGGACAGTGAATTCATGCGAAAGCGTGGTGATGGATGGCAACCATGACAAAGCAGAGTGGAAAAATGTGCTACAAACAAGGGGAAAAGTAGAACAATACAGCGTCACAATGTGGGGGTTTTAATCTACAAACTATATTCTTGAATTCGATGTTTGTGtcttttacttttgtatttacgTATTCATAATCATCctgaatactttttcaattcatttcattttcaaccGGAATTGCATATATGGcacacatcttttcagagatGATAAATGACTGCATGaaaccatttataaatacaacacacatgtatataacACAAAGTATACTACCTAAATAatgaagatattaaaaaaaactatttatctATAATTTTCCTGGAAAACTTATATTTTGGGGCTGGACATTAAATGCAACAGCAGGtgttgattaataataaaaagtcaaCAGTGTTAAAGGTGTGTTGCATGCTAGCCTCGTCTGAAAAGAGGGCCGAACACGGGGCCGCGGCTGTGCTGTGACTGGGCaggccagcagggggcagcacaGCCGCACCGCAGCGCTCACACTGCTGGCGGCAGGGAGCCGGCACCGGTGTCCTGACAAATAACCAAGTGCGCGTCAATGAAAATGAAGGACAAAGGGTTGTATTGCACTCGCTTTGACGGAGAAGAGCCCCACCTGCTCGCCCAATGTGCCTCACCTTAACCCGCACCGCAGGACTGGCCAGGCTCTCCAGCGCGCCTCTCAGCCCGATGGCAGCCGCAGCCCCGACCTCGGCGATCAGGTTGTGTCCGCAGGCGTGTCCGATCCCCGGCAGCGCGTCGTACTCGCACAGGAAGCCTATGTGGAGACCGCTGTCCCCCGCCGGGCTGCTGCTGCCGGGTCCCCAGGTGGCCCGAAAGGCGGTGTCCATTTTGTAATGGCTATCGATGCTCCAGCCCTGCTCCTCCGTGAAGAAGCGGACGAGCGTGTCGTGGGACTGCCTCTCCTGGTAGGCCAGCTCCGGGCAGCCCCAGATGGCCGCGCTCAAGGCGGACAGTTTGTCCCCGGCCGCGTCGATGCAGCCGCCCGCTTTGAGCTTCAGCCGCTGCGGCAGGTCCGCTCCCCTCGCCCCGGTGTCCCCCGGACCCATGGCCGGCCCGGACAGTGAGGACGGACGGGGACTTGGTCACTCAGCGGACCCCGATGGGAGAGCCCAGCCCGCTTATTTAGTAACagggagaaaatgaaaagccCTGTTAGCTGTATCTGTCTCTATCGGTCGAACTGGCCTGAGAATAATCTGTTTTCCGTATTATTTTGTTCGTCCTTACATGTGCGGAACAAGAGTGGCTATATTTCTGTAATAATCGTTGTTTGTCTGCTGTGGTATAATTGCCGCTGTACTGCTCCCGCAGCGGCTCCGCTCACCTCGCCGACACA
>TU2458
cagccAATAAGAAGGCCATTCTGGTGGTGATGCACCATACTCACAACCCGGAGCTCATTTTGGCTGAGAGCAGCTCTCTGGTGAAGAACAGGGCAAACATAGTGGGAACTGTGGACTGTCTGTTCCATGAGACTGTGGGATTACTGCAGTGTGGAGTCAACACCCAGGCTGTGAANNNNNNNNCTGaaattgtacaaatatatactCCCAGTCATACTCCAATATGTCATTCTCTAACCTTTATCCAAAAAATTTTGATTGTGATTTCAGCCAGTCTGTTACTTATCCTTCTTGTGATACTTGTATGTTATTTGgccaatttgttttgaaaacgttttttttgtttcctcttcACTATTCTCACCCAATCagctttaaatattatattctattcaatctagaaaaacaaagtattcagaaatatatatattccatgaagaactgcatttctttccccgTGTGTCTGTGAACGAGTTCACCGTCTTACTCTGTTACTATACTGGGCCAGAGTTCAACCCTGCTACCCAGATATGTTTCATTTAAGTTTGGTGcaataaattatgaatttacTATATACAACACCTCAGACCAAGGAATGTGGTAACAGTTTATTGAACCTCTGAAATAAACCAATAAGCAACAATCAATATTTGTGTTACTGTCAGTGCTGTTTGTCTCTCCTACCAGTGTAACTCAGCAACCACAGACTCtgtgggtcaattgcaacaaacatTCAGATTTAGCAGCACGTGACCCAGCACGTGACCCAGCACTTCAGAACAAACATTCATAACATGCCCTGTAAGTAGTTTCATTCCAGAAAACAATTATAGTATAGTGTTGGATTATGAAACAATGAAATGGCTGAAGTTTCTGAAATAAACTAGCACCAATTATAGTTGATACTGCCTGTGCTGCCAGTGTAGCTCAGCAACGACAAACTGGGGGTCAATTGCAAGATTTGTTACACCTATTGGACTAACTTGTAAACCGTTTGCATGACACTTTCCTCAGGATCATCCCCAGTTCAAGATCATAATTTCCTTCTGTTAGGCAATATACAGTGGCAGCTATGTTCAGCTGCTTTAATTTATAATGGAAAGGAGTAGTAGTCACAGCCCACTATTTAgtgcacatttttcattataatactttaattataataagGTCTCCAGTCCatgtgtagtacagtacagttctattaaatttgatttaattaaatagaaGGATTTGAAGCCCCTGTGTCCATATTGTAGGACTGTTGTCAACCAGACACAAACCGGCTGTTCTCAATTAATCTACACCTCCTTCAGAATACACCAGTCACACTATGCTGACAAATTTATGCCAGTGAGGAGGGGTCTCACtatccccaccccctctccccacaCAGACCTGACACATTCCCAaatgtacacaccacagagtcaatGTCTGGagttacaataaaacaagattATTACAATTGTAAGATTATTTGTTAGaacagaatttcccatagaaaaatacattccatCTGGTtcggtagaggaaacagacttccttcCTTTTACCTAAGCTCCCTGGTAGCCTCTGGTAGGCTCTGGTAGCC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2456 True 4449 lncRNA 0.40 3 11732804 11863101
TU2458 False 1591 lncRNA 0.47 2 11809819 11863101

Neighbor

gene id symbol gene type direction distance location
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding downstream 12064 11707557 ~ 11720740 (-)
AMCG00003617 NA coding downstream 121124 11609163 ~ 11611680 (-)
AMCG00003613 cnr1,LOC104936193 coding downstream 155527 11575865 ~ 11577277 (-)
AMCG00003611 NA coding downstream 164523 11560562 ~ 11568281 (-)
AMCG00003610 NA coding downstream 190159 11528304 ~ 11542645 (-)
AMCG00003619 LOC108427508,LOC101167911,LOC103355980,LOC108270165 coding upstream 3621 11866722 ~ 11878169 (-)
AMCG00003627 ube2j1 coding upstream 77393 11940494 ~ 11957654 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding upstream 95471 11958572 ~ 11976961 (-)
AMCG00003629 LOC104963585,LOC104944503 coding upstream 216367 12079468 ~ 12130611 (-)
AMCG00003631 NA coding upstream 293266 12156367 ~ 12176632 (-)
G1935 NA non-coding downstream 346750 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 681726 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1316917 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1880466 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1881377 9850691 ~ 9851427 (-)
G2066 NA non-coding upstream 163818 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 188144 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 204948 12068049 ~ 12068258 (-)
G2140 NA non-coding upstream 524507 12387608 ~ 12387931 (-)
G2142 NA non-coding upstream 554827 12417928 ~ 12418336 (-)
AMCG00003595 myo6,LOC106571274 other downstream 615899 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 776451 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 1099692 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1854360 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1867155 9853199 ~ 9865649 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 58890 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 212218 12075319 ~ 12078152 (-)
G2236 NA other upstream 1171852 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1208695 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1801642 13664743 ~ 13732039 (-)

Expression


Co-expression Network