G2139


Basic Information

Item Value
gene id G2139
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12387603 ~ 12388058 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2587
gaaaacacaggaactggggtgcagaaaaatggcagcaggtgatctggactgatgagtcaaaatgtgaaatatctggctgtagcagaaggcagtttgttcactgaagggctggagagcggtacacgaatgagtgtctgcaggcaacagtgaagtatggtggaggttccttgcaagtttggggctgcatttctgcaaatggagttggggatttggtcagaatgaatggtctcctcaatgctgagaagtacaggcagatacttatccatcatgcaataccatcagggaggcatctgattggccccaaatttattctgcagcatgacaacgaccccaaagaTACAgtaacagtcattaagaactatcttcagtgtaaagaagaacaaggagtcctggaagtgatggtatggcccccacagagccctgatctcaacatcatcgagtctgtctgggattaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2587 True 456 lncRNA 0.34 1 12387603 12388058

Neighbor

gene id symbol gene type direction distance location
AMCG00003630 NA coding upstream 238704 12147640 ~ 12148899 (+)
AMCG00003628 NA coding upstream 242675 12132846 ~ 12144928 (+)
AMCG00003624 NA coding upstream 362669 12006436 ~ 12024934 (+)
AMCG00003622 NA coding upstream 530870 11851827 ~ 11856733 (+)
AMCG00003620 NA coding upstream 547107 11839737 ~ 11840496 (+)
AMCG00003634 NA coding downstream 462075 12850133 ~ 12854702 (+)
AMCG00003639 exoc8 coding downstream 478359 12866417 ~ 12868471 (+)
AMCG00003633 trim67,LOC106571401 coding downstream 484455 12872513 ~ 12880357 (+)
AMCG00003642 NA coding downstream 503110 12891168 ~ 12901958 (+)
AMCG00003641 NA coding downstream 530779 12918837 ~ 12926056 (+)
G2125 NA non-coding upstream 127960 12220322 ~ 12259643 (+)
G2086 NA non-coding upstream 298617 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 359410 12026126 ~ 12028193 (+)
G2027 NA non-coding upstream 481415 11905983 ~ 11906188 (+)
G2018 NA non-coding upstream 556183 11813122 ~ 11831420 (+)
G2250 NA non-coding downstream 686630 13074688 ~ 13080021 (+)
G2264 NA non-coding downstream 710503 13098561 ~ 13101316 (+)
G2267 NA non-coding downstream 714399 13102457 ~ 13102666 (+)
G2281 NA non-coding downstream 839177 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 859251 13247309 ~ 13254443 (+)
AMCG00003614 NA other upstream 657612 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 810274 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 896006 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 904672 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 2605847 9777508 ~ 9781756 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 514508 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 637511 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 767002 13155060 ~ 13206839 (+)
G2440 NA other downstream 2030458 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 2463694 14851752 ~ 14866758 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G674326 NA non-coding NC_048572.1 CM023226.2 12567047 ~ 12567554 (-)