G2257


Basic Information

Item Value
gene id G2257
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13077648 ~ 13080021 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2734
NNGCACTGCGAGatttgctcttctgtttgttcAGTAGTGCTTACAGGTGCCAAATAGCAAAGTCTGAATAATATCTTAATCGCAGCATCCAAGTAAAGGATCCTGAGTTTTGGTTAGTTAAGTAGCTGGGGAAGGTGAGTGTCAATAGAAAAGTCAGAGGTATGACCTCATATACTGTTCCTTTAAGTTcaatatacctttttttttttttctcttaactCCCCATTGCATAATTTGTGGTATGGTTGAGTTAACTGAGGTTTTTTTTCAGTGTCAGATGTGCTTGTCTCAgagttttttttccataatgTTACTGCAATTTGAACTCCAAGAACTGAGCACAGAGAAGTAAGCACTAGGAGTCTAGTAAAGCAAGATTAAAGCTTGAGTTGtcaaaaaaaaagggggggggtgAAAGAGTAATGTCTCATTTATTCACAAGTAATGCATACTGGTAGGTTTTCCCTTGTGTTTCGTTTTGCCCTGTCTGTATGAAGACTGCTGTACCTTCCTGTTCAAATCAGAAAGTTTGGAGCTTCTGACTGTAATCCAGCTTTGTCTTCTGTTACCATTCAAGAGAGAAGTCCCAAATGTATGTCTAAGTATCGTTGAATTGACTcatacaatactttttttttacataaaataaagccctttgcttgattttcttttgtttgccCCCCttatctttctttttgtgttgttatttttctgtttaatctgTTAGCTATTTGGTAATCTCTACaagcaataaaatattttaaggtTCCAGATACTGCTTTTCAGCACAGCTAGCATGTGAAGCTTCCAGTAAGTTTACATCGACTATTCCTGTTGAAGTAAGCAGGGTATTGGAGTGTCTCTGATCTAGACTATATACGCTGTTGTGAAAGGGTGCAATAAAGCAAATCCCCTGGAGCAATGGTTCTCAAACCTACAGACCTACAAAACCTACAAATCCAGCAGACCtaccctgctggattttgttccaactgagcttggttacttaattgaacccttaattgaagtaattagattacatttgactctttagattgtgtaactgataacaAATTGGTTCCTTAACAATtttcttatacaattttaaacttaaCTTAAATCCCCTACtgctaaaaataattaaaaggctctgatttaggaaattattagttaaattaagggttaaattaagtaaaaaccagcagggtaggtggtacttcaggacaggtttgagaaccactgccctGGAGGGTAGTTCTGACATTGAGGTCCTCACGAATATATCGATAAGAAAATTGTTGAAAAAGTGTGCTGGGGCAACGACTGGCAAATAAAAGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU2734 True 1338 lncRNA 0.37 2 13077648 13080021

Neighbor

gene id symbol gene type direction distance location
AMCG00003651 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 12094 13055994 ~ 13065554 (-)
AMCG00003650 acbd3,LOC106571761 coding downstream 27256 13037692 ~ 13050392 (-)
AMCG00003645 NA coding downstream 109492 12926695 ~ 12968156 (-)
AMCG00003646 NA coding downstream 170759 12905372 ~ 12906889 (-)
AMCG00003644 NA coding downstream 186513 12883467 ~ 12891135 (-)
AMCG00003662 xdh,LOC104966294 coding upstream 37345 13117366 ~ 13212180 (-)
AMCG00003660 NA coding upstream 137520 13217541 ~ 13233616 (-)
AMCG00003661 NA coding upstream 154052 13234073 ~ 13236047 (-)
AMCG00003658 wdr26,LOC103044372 coding upstream 171077 13251098 ~ 13270245 (-)
AMCG00003657 NA coding upstream 201430 13281451 ~ 13283514 (-)
G2235 NA non-coding downstream 43588 13033239 ~ 13034060 (-)
G2234 NA non-coding downstream 44884 13031928 ~ 13032764 (-)
G2196 NA non-coding downstream 175703 12898431 ~ 12901945 (-)
G2168 NA non-coding downstream 207697 12869501 ~ 12869951 (-)
G2142 NA non-coding downstream 659312 12417928 ~ 12418336 (-)
G2266 NA non-coding upstream 20491 13100512 ~ 13101318 (-)
G2285 NA non-coding upstream 51599 13131620 ~ 13143528 (-)
G2287 NA non-coding upstream 92611 13172632 ~ 13178172 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding upstream 153474 13233495 ~ 13236993 (-)
G2324 NA non-coding upstream 334840 13414861 ~ 13415156 (-)
G2236 NA other downstream 42159 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 999496 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1137865 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1288373 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1960743 11063121 ~ 11116905 (-)
AMCG00003667 NA other upstream 584722 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 929437 14009458 ~ 14013021 (-)
G2500 NA other upstream 1730765 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 2435652 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 3527389 16607410 ~ 16628401 (-)

Expression


Co-expression Network