G2264


Basic Information

Item Value
gene id G2264
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13098561 ~ 13101316 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2742
caaaaatagaaGTTTATTGCGTCAAATGCATCAGAGATCAGCCTGTGCATAGAAAATAAAGATTCAGATCCAGTTTAACTTTATGTGCTTGAAAGGTTGATATTCAAGTGAAGACATGACACTCACAGACAGCAAAatcccaaaaatatatttgcttcTCCACCTTCTTCATCTTTAAGCCAAGGAACTGTAATTCAAATAGGCCTAATTGGTCATTACATTGAAATAGGCTGTAAGCAAGATAAAACACAGTACATGTTCCAACAGACTtagaaataatgaatatatcaatacaatatactgtTGGCCAGCACAGAGCTGTATGTAATATCTGCATAAGTCTGCGACAAATGCTAGAAGATGCATATTGTTCATTCtagctggaaaataaataacatttctgaCTAGTGAACTGAAAGTTTTCAATGGGAAATGACAATGTATCTGTAAccagcttttatttatattgtttgccccttcccctgagctattaactatgacatCTGGAATAACACACAATAGGACAGAAGTTTCTAAACCAAACTGGTGTTTATTCAGAGGATCTTTCATTTCCAAACCGTCTTGCCAGCAAAAACACTCAGCTCTACACTTTCTATTATTGCCGCTCCAGCTCAACTTGTGGTGCATCATCACACCCTGATATACCCCTCCGACACATCACCCCCACTCCCCAATCACCGCTCCCTGGCTGGACCACCCGGGgatgggggggatgggggggatggggggggtggggggcatgaAAACCAAAATACCCAACAATATCACTCTCTATCCCCAACACAAGAATTAAcactccccccacacacacacagtatacactgatcggccataacattatgaccacctgcctaatattgtgtaggtcccccttttgccgccaaaacagccctgacctgtcgaggcatggactctactagacctctgaaggtgtgttgtggtatcggcaccaagacgttagcggcagatcctttaagtccagtaagttgcaaggtggggcctgcatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttgtgatgctcacgtgcccattgtaggtgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcagctacgcagccccatacgcaacaaactgcaatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcatcaatttgagctacagtggctcgtctgttggattggaccacacgggccagccttcgctccccacgtgcattaacgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccgtgtcaaagtcgctcagatccttacacttgcccatttctcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgatcggtgtttttatagcaaaatgtttttctggttatattattctgtattctgtgcAATGCACgattatatatttctatacatttgcaaagagaAAAGGAGACTTGGCCTTGTTTGAACCCCCTCAAGCCACAATTCCATACTCATGTCTTTTATGCTAATGTCGTCTAAAtaattcataatcacaatatatatatatatatatatatatatatatatatatatatatatatatattttttttttaatagcattaGGTTATATTATCAGAATTTCAAGGACAATGTTTAAATGACAATGTTGTTTTATAGCTGAAGCCATCAGTAAAGCTGACACAAGGAAAATGATTAACATGCTAAATAGGCTGAGCTAATTTTTTTGCTCTCATTTTATTTGCATCCACTTGGCTCATTACCAGAGacacaaaatataatctgcTGTATGTTctcaattgtatattttgttgcacatcTGTCTACAtcttttacatttgttatgattctttttttaatagtttttttatagttttatatactTCATTCcctaaatataaattaaactaatatattgtatacatttgtaatatacTATAcactttgtattaaaatgtgttattagtagtagtatttgatCAAATGTGAATTCCAGTAAAAGAGTTACACAGGTACAAGTATAAAGTTACAAGTGGTGGCATGtttcatatattatatttcagACTTCAGCACGTATTCCTATTAAATGGTTTCAAAAGCTGTCCAATGTAACAGTAAGTTTCTCCAGACCGTTCTCTAAAGTAGGACTGGCCAGATGAAATAACATCCAAGCTAGCTTCATAATGATCCAAGAAGTGTCATTCAGTTGGGAAATTGACAATTTGTTCATTCTAATTACAAGGGAAGGGAGGTACAGAGAACAGGTATTAAAACTGAAAGCTGGCATACAATAAgtacattaatattttacaatgtcaAATCAGTAATATGAATTGTGATaatcttatttaaaattatcTGGTTTTGTGGACTGTATAAATGAAGAGGAATGAGAATAGTGTTGTAGGAATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2742 True 2756 lncRNA 0.39 1 13098561 13101316

Neighbor

gene id symbol gene type direction distance location
AMCG00003653 NA coding upstream 6467 13091093 ~ 13092094 (+)
AMCG00003647 NA coding upstream 43380 13053429 ~ 13055181 (+)
AMCG00003649 ccdc28a coding upstream 74322 13020377 ~ 13024239 (+)
AMCG00003641 NA coding upstream 172505 12918837 ~ 12926056 (+)
AMCG00003642 NA coding upstream 196603 12891168 ~ 12901958 (+)
AMCG00003654 cnih4,LOC106584110 coding downstream 140735 13242051 ~ 13246855 (+)
AMCG00003656 NA coding downstream 218887 13320203 ~ 13325222 (+)
AMCG00003666 NA coding downstream 636286 13737602 ~ 13744368 (+)
AMCG00003668 NA coding downstream 695963 13797279 ~ 13797599 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding downstream 908155 14009471 ~ 14013046 (+)
G2250 NA non-coding upstream 18540 13074688 ~ 13080021 (+)
G2139 NA non-coding upstream 710503 12387603 ~ 12388058 (+)
G2125 NA non-coding upstream 838918 12220322 ~ 12259643 (+)
G2086 NA non-coding upstream 1009575 12087537 ~ 12088986 (+)
G2042 NA non-coding upstream 1070368 12026126 ~ 12028193 (+)
G2267 NA non-coding downstream 1141 13102457 ~ 13102666 (+)
G2281 NA non-coding downstream 125919 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 145993 13247309 ~ 13254443 (+)
G2323 NA non-coding downstream 313615 13414931 ~ 13415156 (+)
G2326 NA non-coding downstream 384276 13485592 ~ 13485807 (+)
AMCG00003648 LOC106571761 other upstream 55964 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 181559 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1368570 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1521232 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 1606964 11490185 ~ 11491597 (+)
AMCG00003655 xdh other downstream 53744 13155060 ~ 13206839 (+)
G2440 NA other downstream 1317200 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1750436 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 2199764 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2923555 16024871 ~ 16039640 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G389630 NA non-coding NC_047622.1 CM018568.1 672061 ~ 731313 (-)