G2287


Basic Information

Item Value
gene id G2287
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13172632 ~ 13178172 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2771
TGTTGGAGGCAATATCATGACTGCAAGTCCAATCTCTGATCTCAACCCAGTCTTCATGGCTGCCGGCTGTCTGCTCACATTGCTGTCAAAAGGAGGTAAACGAGTTGTAAAAATTGATGACAAGTTCTTCACTGGATACCGAAAAACAGCCATAAAACCTGAGGAGATATTGCTGTCTATTGAGATTCCTTACACAAGGAAGGTATGTAACGAGAGAGACACTTTACTGCAACTTCCCT
>TU2772
TGTTGGAGGCAATATCATGACTGCAAGTCCAATCTCTGATCTCAACCCAGTCTTCATGGCTGCCGGCTGTCTGCTCACATTGCTGTCAAAAGGAGGTAAACGAGTTGTAAAAATTGATGACAAGTTCTTCACTGGATACCGAAAAACAGCCATAAAACCTGAGGAGATATTGCTGTCTATTGAGATTCCTTACACAAGGAAGGTCACATGTGTTGGTCACATTATCGGGGCAATTGTT

Function

NR:

description
lipoma-preferred partner homolog

GO:

id name namespace
GO:0061982 meiosis I cell cycle process biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903046 meiotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU2771 True 239 lncRNA 0.32 2 13177460 13178172
TU2772 False 238 lncRNA 0.43 3 13172632 13178172

Neighbor

gene id symbol gene type direction distance location
AMCG00003651 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 107078 13055994 ~ 13065554 (-)
AMCG00003650 acbd3,LOC106571761 coding downstream 122240 13037692 ~ 13050392 (-)
AMCG00003645 NA coding downstream 204476 12926695 ~ 12968156 (-)
AMCG00003646 NA coding downstream 265743 12905372 ~ 12906889 (-)
AMCG00003644 NA coding downstream 281497 12883467 ~ 12891135 (-)
AMCG00003660 NA coding upstream 39369 13217541 ~ 13233616 (-)
AMCG00003661 NA coding upstream 55901 13234073 ~ 13236047 (-)
AMCG00003658 wdr26,LOC103044372 coding upstream 72926 13251098 ~ 13270245 (-)
AMCG00003657 NA coding upstream 103279 13281451 ~ 13283514 (-)
AMCG00003659 adcy3,LOC107688975 coding upstream 112127 13290299 ~ 13316898 (-)
G2285 NA non-coding downstream 29104 13131620 ~ 13143528 (-)
G2266 NA non-coding downstream 71314 13100512 ~ 13101318 (-)
G2257 NA non-coding downstream 92611 13077648 ~ 13080021 (-)
G2235 NA non-coding downstream 138572 13033239 ~ 13034060 (-)
G2234 NA non-coding downstream 139868 13031928 ~ 13032764 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding upstream 55323 13233495 ~ 13236993 (-)
G2324 NA non-coding upstream 236689 13414861 ~ 13415156 (-)
G2337 NA non-coding upstream 329720 13507892 ~ 13508930 (-)
G2443 fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052 non-coding upstream 1231064 14409236 ~ 14410253 (-)
G2444 LOC108270052,LOC108428681 non-coding upstream 1237207 14415379 ~ 14415673 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 55972 13071796 ~ 13116660 (-)
G2236 NA other downstream 137143 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 1094480 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1232849 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1383357 11743989 ~ 11789275 (-)
AMCG00003667 NA other upstream 486571 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 831286 14009458 ~ 14013021 (-)
G2500 NA other upstream 1632614 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 2337501 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 3429238 16607410 ~ 16628401 (-)

Expression


Co-expression Network