G2294


Basic Information

Item Value
gene id G2294
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13247309 ~ 13254443 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2780
tgttttatttttttaattcaaactggTAACGGCAAACAGCTGCAAACACCAGTTAACCCCTGATATGCCAGCTGTGTTGTAAATAGAACCCTATTCAGGACACTGTTCGTCTTCCCCATTTGACtatccatgtttgttttttgtttgcttttaaaaccctgatttttttctttatttaaaatatgcatacataaCACTTCTCctacacaacattacaaaacagtaCAACCACTTtcataataacacatttaaatgcaaagtaGAGCCCTGCTGACGTCCCACAGAAATGTCCAGAAGACACACAACTGAGATTGGGCAGCTAAAGAACACCAACATTGAAAACTGTTAAAACCtggcaaagaaaataattgtgcatGTTAAAGGCTTTACAGGGGGGGGTTGATTTTAAGGAAACTATaccaattaaaacaagttgcatTAAGGGTTTAGACCAGCTGTTCCACAACAGCGGTACATTTGAAGAATTTGGTTGTCTTGGTTTTGCTTGGAAACGGTCCGACTAGTTCTGATGTTCACCGCTCTTGAATTGGATCGAGGAACAGACTCCAACATACGCGTCATCGCTGGTCATTCCCAGCATCAAGTGGCGTGAAACCACTTGAGACAAATCGCATGAGGAGCCCACTGAGCCCCCTCTTGAAATGGTTTTGAGATGCACACTTTACCACCCTGAGGCATTCCTGGTATGTTACAtccaaacagaataaaatgaatAGACTTCCTTTCTTTCCCCTCCCCAGTCAAGTAATTGTGTTTAAATCAAAAGTACACCCCATTTAATTGGGCTTGATAATGAGCCTTACTCCTTTTACAATTGTTACTTGGGCAAAAGACAAAGAATCAAATTGTTAAATGAGGTGATGATAATGCACCCGTTTCACAATGTTTACAGTTGATGCTTGTTCGGTGAATCAATTATAGTGggtatagtaataataataaaaactaactGTAGTACTAGTAGTTTATAATAAATACTGAGAATAAGAGGCCCAGTGGCaggttatattttaatgtgataatacagaaaaataaaataaatgggaaataaaacaaaataacccaatataatgttaaaagtaaataagtaaCAAAAGTTCCATAAAAACAGATAGACAAAAAGtcttttgaaacatttaatatcAGTCCATAGCAAATAGTTATTACATACCAAAAAAAGCTCTAAATGTAACTAGATCCACCACAACGTCATAGAAATCTTGACAGTTTAGTAATCTTAGATGTGTGAGTATAGATGGtattttgtctctctctgcagctcgGTTCATGATGGAATAAAACCACTATTTTCTTCCATTCTGTTAAACGTGAAATTGAAGCCTAAGCTAAAGGAACTGCATCACTACTAAACTACAATATGGCGAATAAGAAGAATTTAATTTGGCAAAGCAGGGAACCATGTTTTTCAACCAGAGTTTGCAGCTATGAAGTGTCGGCCCTATCTTCCCAACACAGACAACAAGTGGGTCAAAGTGTGCGAAGGCAACGCTGGATTTTAAACGTAACCACCCCCCAGTCACAGGATGCAGTTGAAATCCTGCAGAATAGTTTTTCCCCTTAAGAACAAGCAGCTTTAAATAAACGCATGTACTGCTTAAGCCATCGTTAAACGTGATTTTGTGCTCTCAGACATTTCCAATCATTTGATTTGACATCTTGAGAAATGCCAGTAATTAATGTAGTACATTTTCCTGCTTTCTTTGTGACTAGACCAAgcatattaaaattatatatatataaaaaaaatggtgaCCAAGACCAAACCCTTGTaaagaggaggggaaaaaaaaaaaaatcaaaaggagCACCTTGTCCAGTGGTGGTCTATTGtcaacctttatttatataataaaaagaaaatcctaaAACTGCTATTGTGAGCCAACCCATTTTACTCAGGCACAACAGACAGCAAGGTACACAACATTCAGTCATTGTGGctggttataaaataaaaccggTAATCCCCAATTTTGCAACTAAACTAACACACTGACCGgtattttattaactgaagTACAAGACTGTCAAACATCTGTGAAATGCTAAGGACGGACCCCTGCCCCCCAGCGGCCATGCAaggctgaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactggcctAGTCAAGTCCTATGGTCCTAAAACAGCATCACAATATCAACTGGTTACTAAACTGGGAATTGCTGATAATTGGAGGTTAATAGCCTTACATTGCTGCCTCAGAAAATTAAGGAAGGAGTTGCACTTTAAGAAATTATAAGCAAAATGAAATGGTGTTAAATCTACCAAAGCAGCACCGTGGCGGCACTGCAAGCAGCTCTTACAGTAACAACACCGCctgacagtttaaaaaacaagccACTCGGCAGGGTCACAAGCTCTACTCTTGATGTacctttgtttataattaaaattatatatatatatatatattttttttttttaagaaacttcACTGGCAGAATGACTACAGACACATGCACAGGACTCTTCCACAAAGTATCGTTTGGCTGAAGAGGACTACCGCCCAAGTCTGAAGGAGACACTGAGAAGAGTGGAAAATGACCAATGGCAAAATACCTTTGGATgcaaaaacagtaaaacagaaaacacaaacacacacaatcatactTTAAAGGCTGTGTTCTCACTAAACAGGACTAAAAAAATTGTCAATATCAGACTTCAATAAAGTACAAGATGTAGGTAAAAATACCCCAAATAACTAGGATCACAATTTAAAACCACATttcaaaaagtgtgtgtgtgttaaatatacacacacgtgcgcgcacacatacacaacacatgCGTGTACTGGTACTGGCACTGGGTTGGCTCAAAATAGATAATagactaaaaatatatattcaatttgaATAGAGACCCTTACCCATCTCTGCAAAAgctttaaacattttcagtgttacaGCTGGATCTTTTCTATCAAAAGGTCAGTATAggtcattttcagtttaattttgaaGTGTGGATTctaattttgatgcatttaaatggaagCGCTGTAAGAGATGTatcaattgaaaacaaaaacaagacttttGTAGGACTTCCATCTGCTCTCATCGCTGCGGTGACCCACAGGGATCGAGTCTCCACACCCATGGTTAGAATAGCTGTAGTTTCAAGCCCTTATTGTCCCAACACTGTGAATGCTGAAGTCTAGGCATATTGCCAAATCAAGGTACACAGCTTTATCAGGTACACTCAGATGGTGATATGCTACAGATACAGATCTACATTGTCCAGATATTATGAGGTGATTCGATGCAAAGGCCTGCTGGAATAATTGCATATTAATCCtatgaatgctttaaaaacaatgtaaggtCTCAAATCCTTTCAAATACCCAGGTCCTAGGTCTGACTACTGCAGGGATAGTGTGTAGTCACAGTGGGGTATTCAGTCAGGACATGTGAAGCAGTATGGGAATGTCTTCAGCACGGAGAGTTTTCTTATGAGGAACATACTTACTGCCAATCAAGATATGTCTGGTTCCCCAGGACATGTTAgctaaggtttttttttttttttttttaatcgattGCTGATTGAAATATCAATACTTTACCTAGACAGGGATTACTTTCACCTATTATTTCAATCACCAAATTAAGTTCACACctcacatcctgttccatacaTAACATGCTAGtccaaaacaatttaaataaagtctAAACATGCCAAGTCTACTGATCTAGCAACTGAATTTGTATaggcatttttattattgttttacagttaaCAGTGTTTGTAAACATGTGTATtctttaaacacagaaatacaagcAAAACTGAACAATAGAAGAACACTAGAAGTGCAAGCACCATGTATTTTGTGGGCATCGTGCCCTTAAAGGACTTATGTTGATTCAAAAGGATGGAAGTAATCCAAAATattgaagtttgtttttattttcaataaaaatatgtaaaaaatgtcCATTTCCACATTACTCAGAATCCAAAAGTTGATGAAGCGCCTACAAATGACGCGGGTGCTGTATGTGCGTTTAGCCACACGCTTACGTGTGTACAGTAACAGACAAAGGGAACCCCACTATATGCAAAGACAGGTCTCACTTGCCAGAGTTAAAACATATACACTACGTATCAAGAGTTTTGGGAACTGAAATGTATGTGTACATGCTGACTGGGGAAGAGGAAGGAATTGCTTGTTCATTCCTCCACTCCCAGGATCGCCAATACAGTACTTTTGTGCCCCAAAAAAATAACTGACGACTCCTCTGCCCAGGACATTTTAAATCTATCCATCTTTCCCAGTAAAAGGACGACACTGGGCAGCCGTTACACTTCTGAGATGACTGGTTCAGCCGTCTCTACCGTAAACTTACCCGCTTATCTGTTCAgccacaaaaatatatttgcaaatcaTGGTGATTGAGAAAACAACCACCAACAATTCTTAACTTCCCCCCGAGTCAGCAGGTGCATAATCTGTTGCTTTCAAGCTTTAGAGTTGCAGCATATACCGATGAAATGTACTTTATGCATTACGACATTTTAAATGGCCCAGATTGCGAATGAGCTCTGCAAGTCTATCTTTCACATCTGATCCACTGTTGGGATGCAGACGCCATATCCGAAGCTGTGGATCGGGTACTTCCCAGGCATATTCAAGATTCAAGTCTGGGCTTGTAGGcactaataaaataatctgaatgTTCCTTTTCCAACTTCCAGCACCTTGTTATTTTGGATGTAGTGCaagtgcattttgtttcctcCCCTTCCCCCAAAACTGAAGAACAcctacaataaacaatacatggAAGTCAGAAAGCATTCACCTGTCTTTATAAATGCCTCAGACCTTGAAAATGAAGCAACAGCATGTATGGGAAGAACCCCGATCAGCAATTTATAACCCACTAATGACAGGACAAGACAAAATCATGAACAAATTATTCCTCACCTAAAGTTCATGGCTCCATGTGCTGCTACCAGAAGTGCCAAATATTGtccatattttgtaataatgcaGCAGTTTGGCTAatcatgaaaacatattttCCATGTTAAAATATGGTAATAAAACTGATATAAACAAACATAGCCTTGATGGTATGGCATTTAGACTTAAAATAGACAACGATCTCTGAGCTGTGAGATTGTACCCATCATTCTGCACTGGAGATGCATCTGTATTAATATTGAAACAAGCCAATTATTTCaaagaaacctttttttaaaaaacagaagacattttctactaaaaaagaaacatacctGTTGATATTTGGgcaaattctgtattttaacatgtaaattGTTCCAAATacaaagtggaaagaaagaaaacaaacaaacaattatttaaaataattctctACAAAAATGTAAGCTTTATGTATCTTTTACCCCAGAGTTTACACTGGTCAAGGGCTTTAGAATTACTCGGTGTGAAGAACTTACAGTTGTTAAAATGCACAGTCTTGCATTTCCATAGGCAGGACTATTCTCAAAAGCATCGGCGACTAAATAAGGGTTGAGTACAGAGACCAGTGAGGACTGGAGTAAAGCTGGAATCAAGGTTTCATAGACAGAAATAAGGGATGCAGGTTTCATAATCTACTGATGGGAGATGCAGCCTAGCGTGCATCGTCAccacaaacaaatgtgaaagTGTCATCGGGAATGGTTTGTACAAACAATCAACCAAAGTGCGGTTAGTGTAATAGTGAGTTTAAGAGGGCAGGTCGGGGGGGCAATACATAAAAGAATAGGGAACTAAAATGCCTGTAGTTTGAGATGGCAGAACTATAGACTTCCTTTGAATTCTTGGGTTTTAAACAGTCTTGAACTGCTAATATTGTACCCTTTGACTACACAAAAAGCTGCAGGATGCCATAAGAAAACGACATGTGAACTACTGTCGAATAGTGTGAGGCATCTCGGAGCCGATCGCTATTTCCAATAGACCACACTAACTCTCCCAGAGACTGCAGCAGCAAAGCAGCCTTGTCCAAAGTTTGAAGCAACAACTCAGCACTGTTGAAGATATTCAAATTTTCCCTGCAAAACCTATCCTGTTGTAGACTCCATGTATTTAAAGCACTATTGATAGTGAAGTGTTAATGAGAAAGGTCAGATGTGAGAGAtgatgcagatttgtttttacagaactGTGGCGACGATCACATTGACTACAGTACAGCCACATTCCTTTGGATCCGCTCACGTTACTCCATGCAAAAAGTATTATTGGTGTCTCTGGGTAATTAAGGATGATACTAAGCATACTCTCAGCAGCTATTTATTTCCCAGGATATTGACCTTTAAGATCTGCAGGAAAACCATGAACCGTGCTGTAGAGATACTAAACCAAATGGGGCTAGGAGTCTCAGGGGacttataaaatgaaaacaaaaaaggataaAAGAGATCTCCtattaagtgtatatatattttttttccagactaAAGCACTCCAATTTCACTAATCAAGCCCTCTaaactgttaaataaaaaaaaatatataaatccaaaCAAGCATTTAAACTCCATTACGTAGAAGAACGACAAGAAAGAGAAAGTTGCCAGACCAAAATtggcaaggaaaaaaaaaaaagaaaaaaggtgagTCCAACGGATAGTCTCAATGTATCACAGTTCTTCACAAACCAATGGGGATATTTCAACAAGGCGTCCGACTGCTCTAACGACGTGCTTCTTCTTTGTAACTATGAAGCAAGATGGTAGGATTATTGGCTCCTTATTCGAGTGCCATAGattgttcagttgttttttttctctggttTCTTTAAATGAAGATCATTTCTGTCCAGTAATCGATCGAGAATTTGTTACACCAACTCCAgagccatttaaaatgcaactaatttattttttaggttttatttttttctctttccttcttcttttttataatttttttgtatttttattttttagagaaGTCGTCCACTCCAAAGTCACCATCAACTATCCATGCTACTGCAATCCTCTGTGAGGGAAAAGACAACGAAACAGGTTAGGAATATGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2780 True 7101 lncRNA 0.37 2 13247309 13254443

Neighbor

gene id symbol gene type direction distance location
AMCG00003654 cnih4,LOC106584110 coding upstream 454 13242051 ~ 13246855 (+)
AMCG00003653 NA coding upstream 155215 13091093 ~ 13092094 (+)
AMCG00003647 NA coding upstream 192128 13053429 ~ 13055181 (+)
AMCG00003649 ccdc28a coding upstream 223070 13020377 ~ 13024239 (+)
AMCG00003641 NA coding upstream 321253 12918837 ~ 12926056 (+)
AMCG00003656 NA coding downstream 65760 13320203 ~ 13325222 (+)
AMCG00003666 NA coding downstream 483159 13737602 ~ 13744368 (+)
AMCG00003668 NA coding downstream 542836 13797279 ~ 13797599 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding downstream 755028 14009471 ~ 14013046 (+)
AMCG00003669 esrrga,LOC107719475 coding downstream 802008 14056451 ~ 14067694 (+)
G2281 NA non-coding upstream 18952 13227235 ~ 13228357 (+)
G2267 NA non-coding upstream 144643 13102457 ~ 13102666 (+)
G2264 NA non-coding upstream 145993 13098561 ~ 13101316 (+)
G2250 NA non-coding upstream 167288 13074688 ~ 13080021 (+)
G2139 NA non-coding upstream 859251 12387603 ~ 12388058 (+)
G2323 NA non-coding downstream 160488 13414931 ~ 13415156 (+)
G2326 NA non-coding downstream 231149 13485592 ~ 13485807 (+)
G2329 NA non-coding downstream 253444 13507887 ~ 13509930 (+)
G2330 NA non-coding downstream 255795 13510238 ~ 13510674 (+)
G2331 NA non-coding downstream 257092 13511535 ~ 13511829 (+)
AMCG00003655 xdh other upstream 40470 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 204712 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 330307 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1517318 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1669980 11573731 ~ 11577329 (+)
G2440 NA other downstream 1164073 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1597309 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 2046637 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2770428 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 3778127 17032570 ~ 17042594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G331930 NA non-coding NC_048568.1 CM023222.3 21793795 ~ 21796979 (+)