G2329


Basic Information

Item Value
gene id G2329
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13507887 ~ 13509930 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2825
gtctttgtaatttaaataatttatttaccaCTAGAGCACCACAACATAATGTGTTACAATACATTGtaatgggtaaaaaaaaaacaacaacataaacaaaaacaaaacaaaatctttcaACTGGGTTGATTCCATGCTACCCTCTGAAATGTACTGTTGATAGGGAATTATGTTATATCCTACCCTCACTCTCTCAAATGCTATACTTTGTGACTGGTTCTTACTCAAGGGAAACAACAgctaagaaaaaactaaaaaacaaactgaaaacagggAAATGTCAACAGAAACAAGCATGAAAATACTATCAGTGCAATAATTTGAATCAAAGGATTTTATTCCTAATGAGGAAATACATTAGTGAAGGAAGGCATTCTGCAATGGGGTGGACATGGGAGCGTTTGACTCTCTGCTGCGCCCAGCGCAATCAAGCGAAGCTCTGAAACTCTTGGTGCTCATCTcgacataaaaacaaaatcagttttgGACAAAACATGTTGTTGCAATCACAGTACAAACTGTACGATTCTTTAAAGCAGcctttgctgtgtttgtttcacatGCGTACGTTGCAAAGAAGCTGCAATCTTTTGTCCAAGACTGTGAAATTTAGATATGCTGTTGGTAACTGTGCACCAATGTATAGCAAAATTAAACTTTGTAACTGAATTTGAAGGATTTTTAAACACGACACAATCATTTTGTTTGACAAGTACGTTTTCCATTCCAGACAGCTGAATGTCAATTGGAAATGGTGACAGTTGGAGAAAATATTAAAGACAAGATATTGGGTTCCTATCtcagaaacatatttaaaataaaaataatcaatatacatatatagagagagtaCTGATAGCACATTGCTTCTGGTGGATTGTTGTCACAATTCCTTATGATACCACCTCAAGATGCCTTACATATGGATCGTCAGACTTTCCGTCGGCCCCACTGCATCACTGTGTTAAATTTTAGCCAGAGTATTGAGTGTTAGTATGCCCTCGTGTTGACCTTGTCTTTTCTTACTGGCCTGAACATAAAAAACAGGTCTGAAATGTCTACCCCCCCAACCCTCCCTCTGGAGTAAGAATGAATTAATATACTGACAGTACTGACTGTCCACTACTCACCCAGCGATGACTAGTCACCACTCTAATGCTAGATTTTTAAATACGAAATTAGATTAAAAGAAAGTAACAAATTGCACTATTCCTGAAACAATGCAGGAAACAATAGACGATGCCTTTAAAATGATGTAATGAGCCttcaaaacataaattaaaaaacgtATTCTCCATTCTGTCGTACGCACTCCAACACATGACCAAATACACTCTGCACTTTTTCagctcttttaaattaaaatagcttTCAATTTCATAACAATTGAgcgttttgtgtttgtttgttgtgttgttgttttttaactgtagTGCTATTGAAGAAAGTAAAATCTGTTTTCAGTATGAATCGACAAGCGTTGTAGCAATGCATCTGATCGGTAGTTTTGAGATTTGAAGACtctaaaacagacatttcccTTTTAAACCGAACACATACGAAAACTGATTTtcttgttgaaaaacaaaaggtagTTTCAAAGAGGCAAAAAATAGTTACAGAGAGAAAAACTGGCATCAGACCTGGACAATTAAATCAGGGAAATGGCATTCttctatttatttcacatattgaCACTTAAAAGATTCTTCCAGTGTTTACAATTATGTCTCCTTTATATCACTAACATAGTTGATGGTTATTAACgccttcaaaatgcatttcttccGTTGGCCTTAACGACTCTTCCATACAGACTATGATTGTTGTTTTGAAACTCTTTCTCTTTTAACACTGATACACCCAGACATCCCAACTACAAACCCTTTTTAACTGCACTTACAAGACTTAACAATCATGTTGGATAGCTGTTCGATTTTGGGGGTTTTGCCGATGAAATACAGGATGGTAAGAGGTTCTAAGTCTTGGGAAACACAGCATGGTGACGCAGATGCTTCTGGGTTCATTGTATTGTACATACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2825 True 2044 lncRNA 0.36 1 13507887 13509930

Neighbor

gene id symbol gene type direction distance location
AMCG00003656 NA coding upstream 182665 13320203 ~ 13325222 (+)
AMCG00003654 cnih4,LOC106584110 coding upstream 261032 13242051 ~ 13246855 (+)
AMCG00003653 NA coding upstream 415793 13091093 ~ 13092094 (+)
AMCG00003647 NA coding upstream 452706 13053429 ~ 13055181 (+)
AMCG00003649 ccdc28a coding upstream 483648 13020377 ~ 13024239 (+)
AMCG00003666 NA coding downstream 227672 13737602 ~ 13744368 (+)
AMCG00003668 NA coding downstream 287349 13797279 ~ 13797599 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding downstream 499541 14009471 ~ 14013046 (+)
AMCG00003669 esrrga,LOC107719475 coding downstream 546521 14056451 ~ 14067694 (+)
AMCG00003673 NA coding downstream 582083 14092013 ~ 14190098 (+)
G2326 NA non-coding upstream 22080 13485592 ~ 13485807 (+)
G2323 NA non-coding upstream 92731 13414931 ~ 13415156 (+)
G2294 NA non-coding upstream 253444 13247309 ~ 13254443 (+)
G2281 NA non-coding upstream 279530 13227235 ~ 13228357 (+)
G2267 NA non-coding upstream 405221 13102457 ~ 13102666 (+)
G2330 NA non-coding downstream 308 13510238 ~ 13510674 (+)
G2331 NA non-coding downstream 1605 13511535 ~ 13511829 (+)
G2332 NA non-coding downstream 2264 13512194 ~ 13512531 (+)
G2333 NA non-coding downstream 2670 13512600 ~ 13512998 (+)
G2334 NA non-coding downstream 4730 13514660 ~ 13515065 (+)
AMCG00003655 xdh other upstream 301048 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 465290 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 590885 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1777896 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1930558 11573731 ~ 11577329 (+)
G2440 NA other downstream 908586 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1341822 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 1791150 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2514941 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 3522640 17032570 ~ 17042594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location