G2336 (tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266)


Basic Information

Item Value
gene id G2336
gene name tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13539972 ~ 13541154 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2832
TGTCCGTGGAGTCGTAGGGCCGCATGTCGACCCTGTGCACCTCCTTGGCGTAGTACTCCTCCTCGCTGCGGTCCCGCTCGCACGTCGCCGCCCTCTCGTTGGCCTTCTCCTGCAGCAGGTCCCGGGTGCTGTTGTAGATGGCGATTATATCCTTGGACACTTCTCCGGGTTCAGGGTAGTGGACAGGCGGGCTGTCCAGCTTCAGTTTGCTCAGGATCTGTCCCCGGATGGCTTGGATGCGCTTCTCCATGAACTGGTCCATGTCCAGGGTGCTGCAGGTGGACAGACTGACAGCCAAAGTGGCTAAATCCAGAGTGAGGAAAACACTCAAAATGTAGCAGTTCATCTTAATGAGAAGCCACGGCAGCGTCTTGctttagaaagaaaatgaagcGATCGTGCATAGGGTGGAAGATTTAAATAGGATACTGTAGACACTCAAGTgtgttattatgatgatgatgatgatgccaAATAGATCTGATCGCAATTAACAGCGAGAGTATATGAATTCCCACATGAGGAGTCGAGGGATCTCTCTTATCTCCGCGCACTTATAAATGCGGGTTCAGATGCAGCCGCCGAGCCGAGCATGAGGGCTTTGGGATCCGTTATGCGCGCAGCTGACTAATTGTTGCTGTCAACGCTCAGATgggtcaaaaaataaataagcatgaaCATAGTTTCCAAAAGTCCACTTAATCGTCATCCAGTGCCCCCCAGACGCCTCCAAAAACGACCCCGAGCCGACCCAAGCTGACCTATCCTCTGCGGGCAGCGCACCTCCACCGCATCGGAGACGTTTCTGAGATCTTGTCCAACTCTGGTCCCTGAAAGTCCGCCTTTCAAGCCCTGCAGTCAGACCCCCCCCCTCTGGACTTCACCGGGACCCTGCATTGCCTCAGCCTGTGCCTGTCTAGTGGACTCTGTCTGCGGTGCACTGTGGATGtacatgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgttatatttcagaaacagaAGTATaagcaaagtgaaaaaaaacaataaatcccTGCTCGTTTCCTCAGTGCAAAGGCAGACGCTCCTCCATCCCTTCTGCTCAACTCTCAGCCCCGAGCAGCAGATAACAACATGCCCATGCAGCCGGGGCCGGGACAGATATTTATACGGCGCCCGGTTCCCAGCGTGTCCGCC

Function

symbol description
tgfb2 Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within roof of mouth development and sclerotome development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including mandibular arch skeleton; mesoderm; otic placode; pericardial region; and periocular mesenchyme. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 4 and colorectal cancer. Orthologous to human TGFB2 (transforming growth factor beta 2).

NR:

description
PREDICTED: transforming growth factor beta-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2832 True 1183 lncRNA 0.51 1 13539972 13541154

Neighbor

gene id symbol gene type direction distance location
AMCG00003656 NA coding upstream 214750 13320203 ~ 13325222 (+)
AMCG00003654 cnih4,LOC106584110 coding upstream 293117 13242051 ~ 13246855 (+)
AMCG00003653 NA coding upstream 447878 13091093 ~ 13092094 (+)
AMCG00003647 NA coding upstream 484791 13053429 ~ 13055181 (+)
AMCG00003649 ccdc28a coding upstream 515733 13020377 ~ 13024239 (+)
AMCG00003666 NA coding downstream 196448 13737602 ~ 13744368 (+)
AMCG00003668 NA coding downstream 256125 13797279 ~ 13797599 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding downstream 468317 14009471 ~ 14013046 (+)
AMCG00003669 esrrga,LOC107719475 coding downstream 515297 14056451 ~ 14067694 (+)
AMCG00003673 NA coding downstream 550859 14092013 ~ 14190098 (+)
G2334 NA non-coding upstream 24907 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 26974 13512600 ~ 13512998 (+)
G2332 NA non-coding upstream 27441 13512194 ~ 13512531 (+)
G2331 NA non-coding upstream 28143 13511535 ~ 13511829 (+)
G2330 NA non-coding upstream 29298 13510238 ~ 13510674 (+)
G2380 NA non-coding downstream 537958 14079112 ~ 14079327 (+)
G2446 NA non-coding downstream 879577 14420731 ~ 14421310 (+)
G2517 NA non-coding downstream 1465192 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 1573475 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 1574551 15115705 ~ 15116972 (+)
AMCG00003655 xdh other upstream 333133 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 497375 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 622970 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1809981 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1962643 11573731 ~ 11577329 (+)
G2440 NA other downstream 877362 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1310598 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 1759926 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2483717 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 3491416 17032570 ~ 17042594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G1323 NA non-coding CI01000000 null 2159686 ~ 2160082 (+)
striped catfish (Pangasianodon hypophthalmus) G1216 tgfb2,LOC106605021,LOC106584161 non-coding NC_047595.1 CM018541.1 2163324 ~ 2165381 (-)