G2380


Basic Information

Item Value
gene id G2380
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14079112 ~ 14079327 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2884
TTCgacagagtgggccacgaatacctgcagctcgtcatggagaggatgggtctcgtTCTTGGCCTGAGGAAATGGGTTAAGATCATTTACAGCGgtctaagcagcagggtccttgtgaaccgccacctgaccgaaccatttccggtcaggtcgggggtcCGGCAGGGTtgtcctctgtttggagccgttcatgcaggcgatccgccaggacgtccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2884 True 216 lncRNA 0.40 1 14079112 14079327

Neighbor

gene id symbol gene type direction distance location
AMCG00003669 esrrga,LOC107719475 coding upstream 11418 14056451 ~ 14067694 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding upstream 66066 14009471 ~ 14013046 (+)
AMCG00003668 NA coding upstream 281513 13797279 ~ 13797599 (+)
AMCG00003666 NA coding upstream 334744 13737602 ~ 13744368 (+)
AMCG00003656 NA coding upstream 753890 13320203 ~ 13325222 (+)
AMCG00003673 NA coding downstream 12686 14092013 ~ 14190098 (+)
AMCG00003675 NA coding downstream 112541 14191868 ~ 14204400 (+)
AMCG00003676 NA coding downstream 140805 14220132 ~ 14222904 (+)
AMCG00003671 NA coding downstream 154607 14233934 ~ 14292763 (+)
AMCG00003672 NA coding downstream 220240 14299567 ~ 14328685 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 537958 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 564047 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 566114 13512600 ~ 13512998 (+)
G2332 NA non-coding upstream 566581 13512194 ~ 13512531 (+)
G2331 NA non-coding upstream 567283 13511535 ~ 13511829 (+)
G2446 NA non-coding downstream 341404 14420731 ~ 14421310 (+)
G2517 NA non-coding downstream 927019 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 1035302 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 1036378 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 1049269 15128596 ~ 15130200 (+)
AMCG00003655 xdh other upstream 872273 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1036515 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1162110 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2349121 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 2501783 11573731 ~ 11577329 (+)
G2440 NA other downstream 339189 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 772425 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 1221753 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1945544 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2953243 17032570 ~ 17042594 (+)

Expression


Co-expression Network