G2443 (fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052)


Basic Information

Item Value
gene id G2443
gene name fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14409236 ~ 14410253 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2957
GTAAGGGCAGGGGATGTGGTAGTCCCGGCAGCGCTCCTGCACCCAGGTGGTCTCCCAGACGGACCGGTAGCTCTGCTCGTAGAAGTAGCACCCAATGACAATGAGCAGGGGCACCAGGTAGAGCACGCTGAACACCCCGATGCGGATCATGAACTTCACCAGCTTGTCCTGGTTCTCCTTCTCTAGGGGGATCTCGATGCGCACACGGTTCAGGGACACGATGCCAGCCAGCAGCAGCGAAACGCCCACCAGCACGTCCAGGCAGAGCGGCGCCAGGACGAAGTAGCGCAGCGCGTCCACGTCATACAGCCCCACGAAGCAGACGCCGCTCACATTGTCGCCCTCGATCTTGTTCATGGCCAGCAGCACGACCGTGAGCGTGCCCGGGATGCCCCAGGCACTGGCGTGGAACAGGAGTGCCTTCTTCTCGATGGCCTCGCTACCCCACTTGGGCACAGCGGCCAGGAACCAGGTGATGGTGAGGATGACCCACCACACGCTTCCAGCCATGGTGAAGAAGTAGAGCACCATGAAGAGCAGCGTGCAAGCCTTGTTGTGGGAGCCCTGCGTGACGGTGGCAGCCTTGTAGTGGCCGGGGCTGGCGGCATTGCAGGCCACCCGGTCCTCGAGCAGGAAGCCCAGGAAGAAGACCAGGGACACCATCATGTAGCAGACGGCGTAGAAGATGATGGGCCGCTCAGGGTAGCGGAAGCGCGTGACGTCAATGAGGAAGGTGAGGAAGGTGAAGAGTGTGGCCGACAGGCACACGATGGAGATGACGCCGATGAAGTAGCGTGCGAAGGAGAGCTCCTCCCGCCGGAAGTACATGTTGGGACAGGGCGGGGAGCAGTCACGCACCCCCAGGAAGGAGTAGCTCAGGTCCGGCTCGATCTTCAGCTCGCGGGGGCACCAGAAGCCATAGTCTCTCTGGACGGCCATGGGGGACTCCTCAGTGCCATCCAGACTGGACAGCAGGTCCACAGGACGGGGGTAAGACTCATCGCAGTCTGGGAACCTG

Function

symbol description
fzd3b Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in diencephalon and dorsal telencephalon. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome and schizophrenia. Orthologous to human FZD3 (frizzled class receptor 3).

NR:

description
PREDICTED: frizzled-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2957 True 1018 lncRNA 0.46 1 14409236 14410253

Neighbor

gene id symbol gene type direction distance location
AMCG00003685 NA coding downstream 14332 14387555 ~ 14394904 (-)
AMCG00003677 LOC107733121,LOC107582237 coding downstream 54703 14338426 ~ 14354533 (-)
AMCG00003665 NA coding downstream 847039 13545351 ~ 13562197 (-)
AMCG00003664 tgfb2 coding downstream 894336 13509791 ~ 13514900 (-)
AMCG00003663 NA coding downstream 1010389 13387807 ~ 13398847 (-)
AMCG00003686 cdc42bpa coding upstream 16032 14426285 ~ 14461583 (-)
AMCG00003684 cdc42bpa coding upstream 66671 14476924 ~ 14483379 (-)
AMCG00003687 NA coding upstream 118388 14528641 ~ 14531680 (-)
AMCG00003689 NA coding upstream 207210 14617463 ~ 14644456 (-)
AMCG00003692 NA coding upstream 596164 15006417 ~ 15016678 (-)
G2337 NA non-coding downstream 900306 13507892 ~ 13508930 (-)
G2324 NA non-coding downstream 994080 13414861 ~ 13415156 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding downstream 1172243 13233495 ~ 13236993 (-)
G2287 NA non-coding downstream 1231064 13172632 ~ 13178172 (-)
G2285 NA non-coding downstream 1265708 13131620 ~ 13143528 (-)
G2444 LOC108270052,LOC108428681 non-coding upstream 5126 14415379 ~ 14415673 (-)
G2445 NA non-coding upstream 8325 14418578 ~ 14419732 (-)
G2447 NA non-coding upstream 10478 14420731 ~ 14421315 (-)
G2494 NA non-coding upstream 288706 14698959 ~ 14699237 (-)
G2565 NA non-coding upstream 705730 15115983 ~ 15116183 (-)
G2373 esrrg other downstream 396215 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 677197 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 1292576 13071796 ~ 13116660 (-)
G2236 NA other downstream 1373747 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 2331084 12075319 ~ 12078152 (-)
G2500 NA other upstream 400533 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 1105420 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 2197157 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 2458079 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 2726995 17137248 ~ 17140382 (-)

Expression


Co-expression Network