G2517


Basic Information

Item Value
gene id G2517
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15006346 ~ 15030368 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3058
GACCGAgttcattaaaacagaaattcCTTGCACTGCAatctaaatgaaaaaatacactgtttatTAGAGCCATATATGTattgcaaaattattaaaatgcattcattagaTTTTGGCTTTATTAACAGTTGTACAATGCTTTATACAAGTTATACTTGTAtgttaaagattaaaataattaatcaataattaacCCATCTCTGCACTCTCACTACATGCCCAGGTGTGTTGGGCAGGAAAAGTTACACCCCAGGAAGCTCAATGTGGTGGAGATGGGTATTTTAGAAGGGTTATGACAGTAAGAAAGACCATTTGAGGGCCTGTTTGGTTTTAGGGTGTAGTGAGCTATTAGGAACTGGTGCTACCCTGGTGAAAATAAGTATTGGACAATCTGGTTGTTAATAAAGGTAATCCTCACTGTAAAGTAAACCTGGTGAACTGTTTGTGCTGAATCAATGTGTAAAAAATCAATGTGATTAAGccaatgtaataaaaacagtgCTGGGGATATTTGAATGATATAAATTAACATTGACCCCACTCTATTCCATTTTCTCCTCCTGTGCGTAACTTTCAGGGGGTTCTGCAGTGTGTCGAAAACTCCTACAACGAGTTCCTGGGGCACCTCAGGTGTCGAACTCACAGACGAAGTACATGAGCCTTTCGCAGTCATTGTCCCACCAGTCTCCATCGTCCGATGACAGACCCACGCAGTTCTCCCTCCTGCCTCCGTCCGGCTGGCTGGACAGGTAGGACTTGCGCCAGTAGAAAAACGTCACCCGAGTGCCGTCCTCAAACAGGTAGAGGTCTTCTGATCGCTGGTCACTGATGCCCAGCCACAGCGGCCAGTTCCCCGGGTGGAAGAAACCCCGGCAGTACTCCGCCAGGGCCTCCTGCTCCTTCCTGTCCCTGGGCATTGCCAATCTGCCTCCCCGATCCTGGCAATTCTTCAAAGCGCCGGCGTAGCTTTCATATAGACGGATAATCAGGAAACACTTGCCTCCTGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3058 True 1010 lncRNA 0.45 2 15006346 15030368

Neighbor

gene id symbol gene type direction distance location
AMCG00003691 NA coding upstream 1069 14996897 ~ 15005277 (+)
AMCG00003688 NA coding upstream 389154 14607986 ~ 14617192 (+)
AMCG00003682 NA coding upstream 425436 14564528 ~ 14580910 (+)
AMCG00003681 NA coding upstream 448153 14555990 ~ 14558193 (+)
AMCG00003683 NA coding upstream 458218 14540544 ~ 14548128 (+)
AMCG00003695 NA coding downstream 34648 15065016 ~ 15096524 (+)
AMCG00003693 NA coding downstream 74376 15104744 ~ 15121566 (+)
AMCG00003694 NA coding downstream 114254 15144622 ~ 15156393 (+)
AMCG00003703 NA coding downstream 224688 15255056 ~ 15289576 (+)
AMCG00003705 NA coding downstream 303633 15334001 ~ 15334318 (+)
G2446 NA non-coding upstream 585036 14420731 ~ 14421310 (+)
G2380 NA non-coding upstream 927019 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 1465192 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 1491281 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 1493348 13512600 ~ 13512998 (+)
G2563 NA non-coding downstream 84261 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 85337 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 98228 15128596 ~ 15130200 (+)
G2619 NA non-coding downstream 342827 15373195 ~ 15377637 (+)
G2641 NA non-coding downstream 386608 15416976 ~ 15419869 (+)
AMCG00003690 NA other upstream 139588 14851752 ~ 14866758 (+)
G2440 NA other upstream 586614 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 1799507 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1963749 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 2089344 12902566 ~ 12917002 (+)
AMCG00003702 NA other downstream 270712 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 994503 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2002202 17032570 ~ 17042594 (+)
G3047 NA other downstream 2651449 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 3101551 18131919 ~ 18142633 (+)

Expression


Co-expression Network