G2564


Basic Information

Item Value
gene id G2564
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15115705 ~ 15116972 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3119
aattaataaaaacacatgtgatggtgtttttttaattgatatacgGTATAtgtactcagcaaaaaaagaaacgtccctttttcaggacactgtaataattttgtaaaaatccaaataactttacagatctatattgtaaagggtttaaacaatgttttccatgcttgttcaatgaaccataaacaattaatgaacatgcacctgtggaacagtCATTAAGACACtgacagcttacagacggtcgGCAATTAAGGTcgcagttataaaaacttaggacactaaagagacctttctcctgacaccaaaagaaagatgcccagggtccctgctcatctgtgtgaacgtgccttaggcataatgcaaggaggcatgaggactgcagatgtggccagggcaatacaTTGCAATGTCCACACTGTGAGAcacctaagacagcgctacaggagacaggaaggacagctgatcgtcctcgcagtggcagaccatgtgtaacaatacctgcacaggatcggtacatctgAATAttacacctgcgggacaggtacaggatgcaacaacaactgcccgagttacaccaggaacacacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaCCAGACATCACTGGCAACAACGTTGCTTATGGGCACAAAACCACCTTCGCTgcacgtgatttcctgcaagacaggaatgtcagtgttctgccatggccagtgaagagcccggatctcaatcccattgagcaggtctgggacctgttggatcggagggtgagggctagggccattcctcCAGAAATGtgcgggaacttgcaagtgccttggtggaagagtggggtaacatttcacagcaagaactggcagatctgggtcagtccatgaggaggagatgcactgcaggacttaatgcagctggtggccacaccagatactgactgttacttttgattttgaccctccctttgttcagggacacattattcaatttctgctagtcacatgtctgtgaaacttgttcagtttatgtcttagttgttgaatctttttatgttcatacaaatatttacacgttacgtttgctgaaaataaaagcagttgaaagtgagaggacatttcttttcttgctgagtatatatttacttaaaactagaaagatgcaaaaactaaaagtaaaagtTTACGTCAATATGTTGTGaaaggttctttcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3119 True 1268 lncRNA 0.36 1 15115705 15116972

Neighbor

gene id symbol gene type direction distance location
AMCG00003695 NA coding upstream 19181 15065016 ~ 15096524 (+)
AMCG00003696 NA coding upstream 61334 15019408 ~ 15054371 (+)
AMCG00003691 NA coding upstream 110428 14996897 ~ 15005277 (+)
AMCG00003688 NA coding upstream 498513 14607986 ~ 14617192 (+)
AMCG00003682 NA coding upstream 534795 14564528 ~ 14580910 (+)
AMCG00003694 NA coding downstream 27650 15144622 ~ 15156393 (+)
AMCG00003703 NA coding downstream 138084 15255056 ~ 15289576 (+)
AMCG00003705 NA coding downstream 217029 15334001 ~ 15334318 (+)
AMCG00003701 LOC106607895,LOC106571478 coding downstream 236506 15353478 ~ 15370866 (+)
AMCG00003706 NA coding downstream 277841 15394813 ~ 15398406 (+)
G2563 NA non-coding upstream 868 15114629 ~ 15114837 (+)
G2517 NA non-coding upstream 85337 15006346 ~ 15030368 (+)
G2446 NA non-coding upstream 694395 14420731 ~ 14421310 (+)
G2380 NA non-coding upstream 1036378 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 1574551 13539972 ~ 13541154 (+)
G2571 NA non-coding downstream 11624 15128596 ~ 15130200 (+)
G2619 NA non-coding downstream 256223 15373195 ~ 15377637 (+)
G2641 NA non-coding downstream 300004 15416976 ~ 15419869 (+)
G2681 NA non-coding downstream 787511 15904483 ~ 15904820 (+)
G2698 NA non-coding downstream 915736 16032708 ~ 16032935 (+)
AMCG00003690 NA other upstream 248947 14851752 ~ 14866758 (+)
G2440 NA other upstream 695973 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 1908866 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 2073108 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 2198703 12902566 ~ 12917002 (+)
AMCG00003702 NA other downstream 184108 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 907899 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 1915598 17032570 ~ 17042594 (+)
G3047 NA other downstream 2564845 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 3014947 18131919 ~ 18142633 (+)

Expression


Co-expression Network