G2619


Basic Information

Item Value
gene id G2619
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15373195 ~ 15377637 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3193
GGGGGGATCAAATGAAACGAGCATAGAGAACAACAAAGGAATAACTGTACAGTTTTAACAAGAAGTATTGTTTTTAGAAGTGTTTCGACTATTTTTACAGTGTGTAGAAGGTAGATATCAATCGTTCCCTTTCCCTTTTGTGGAAAGGGGGGCTGTTAACTTTTGTCATTTTaacctttcccccccccctcccccccagccaGCTCCTGGTTTTAATGGGAGTTCTAGTCCAGTTTGGGGAGAGGGTTGGGGTGTCTgcacaaacattaaaaagtcatttttaataaaagaatTATGTAAGTTTGGTGATAACAGATCATTCTAGTACAGCAGGCATTTGTGTGCACTTACTCGCATTAAAGTATTATCTGTGAAGTGCTTCAAGAAAGATCCTAATCACATCTTGATGTGGGAGGTCCTCAGTTCCCCGTGTGTTCAGGAGccatttttctctgtctttaaaGCACTGGTCAATCCTTGAGAGTGTAGGTCTCCTCAAATGTTCCCTATCTTAGGACCTGGGAAGAGTGTTAGGTCAGTCACATTATGCAAATTGTGTTGAGGTGTAGAGTGAGGAAACTCAGGTGGGATGACAAACGCTTCACCCTTGTAGCCCCCCCACCCGTCATCCAAGGAGTGGAGTTCGAAACCGTGCTTTAAGGGAATGAGTCAGCTCTGATGAGTTATAGTCACTGGAATGTCTTTGGTGTCCAATAGAAAGTCTAGAGGTGACTAGCATAGAAAAATGGCTCCTTGGGGTTACTGGGTTGTTTGTGTCTCAGTATTATTGCTCTCTTCAGGGAAAAAATGGATAGTTCAGCAGCAGCATCACAATACACAATCATGGGCATGTAACAATCTTGGGTGAACGAAAATGGGATTTTCCTCGTGATATGGGCCAGACATACACTACTGAAACTCAGTGTTCACGATGCAGCTTCCCTGCTTCTGTGTGTTTCGACTGGGAAGCGCAGTGAGAGATTGGGGAGGGGAAGGTATGTACTGAGGCTGCTGGGAGATGTTTTCTTGAAACACTTCAAAATGACGCTGCAGTACTGGGTTTATGTTGaatttgctgctgctgctttgctGAGGAAAAGGGAAGACAAACAGATCTTCAGAGAAGCctgaatgaaaaacacacaacgcATTCATCGACCAAAGGGATTTATCCAAACTACAAACCGCATGACAAGTACATACAGAACAAAAGACTGCCATTACCAAGCAAAGGAGAACAAACTGAGCTGTGACTGACTGCTACAGGAAGCAGGGTTACGTCTGACTTTCTAGCTTTCTCTCCAGCTTAAGGTTAATTTCATCAGGAGGGCTTGAATGCAGTGGTCTATGTCTTGACAGTGTCAGTGACTCTCCCTGTAAACATCACAGTTCAGTGCCACCTCTTCAAAGACTTGAATTCGATTTGCCACACGGTGAACTCTGTATCCTGCTAGTCTTTCTCAGCGTGACGTTCTGTGTGCCCTTTGGACTcgtctgtgttgtgttgaacCTGGCTCCAGCCTGGGCCTGAAATTCAGGCTTGAATGAAGGAAGAGCAGTAGAAGTGATAAGCGAGTGCGATCAATTTCATTGCTTAACTGCCAGGGCTGAAGTGCTAATAGTGCACTCCTGTAATCTGTAGTGTTAGCCAATTTGTCCCTTTGACTTGACTCCTGGCACTAGGTAATTTCTCTTAAGAGGTTAATTAATCCTACCCGGAGTCATTAAACTGCTTTCCATCAGCGCAGACTAACAGTTAATTCTCCCGTTTCTCCTCTCATTCTGCACAATAATTTTCTATCGAGCGGGTAACGGAAGGAACACACCTCTGATATTGGTTGTGCTGCCTTTTTGTTGTCGGTTAATTTAAGTGTGCACTTACGGGATGATGATCTTGCTTACTATGACTGACTATTTGGTCATTGTGTAGCTGGGATTGAAAGCTCAGGCTGTAGCCGGGTTGATAACTGTAGATGGGCTAAAGCGGTCTTGTTATAGTTGTGTGCGTGGAACCGCAAAACAGACTCGGGCTTATTGAACACAGACGTCTGTAGACCTGTGAGTTTGAGACCACTTTGCAAATGATCTGGAATGACAGAATGCAAGCTTTTGATATTTAAATCTAGTACATACTAAGGGTTTAACCTCCGCTGGTTCCCGTCACTAAAATCTCCCTGGAGAGCGTTTCTAAGAGGACTGTATTACTGACCCAGCACCTTGTGGGGCGTTGACATGTTGCTGCCTAATTCCAGTCCAACtggctttgtttctgtttcaggttTAGGAAGAGTATGTAAAACATACTGTATTTATCCCTGACATTtttaaggtttgttttttgtttttgctctgtttttgtttctttgcgaAATGCCAGAAGGGATCTCATTCGTTAGCTCCCCTGCTAATGAGACTGcttgtatttttctctgtgaGCGAGACATTTGCTGACATCACACTACAGTCTTTTGTTGGCAGACTGAACTTAGCTTGGCACGATGTCTTGTTTAGTTTGATTCTAAGGACCGGCATCAGTTTGCTTACTGCTCAGGATCTTTTCACACACCCTGTACAATATCCGTCTTACAGCCTTAGATGTGCAGGGAAAaaatgaggaggaagagggagccacagtggagagaaagaaaacatgcagATTTCAGTTCAGTAAACTTGCAGTGTTTACCAGGGCTTTGAAAATATCTTGGGTGACGTTGCACTTTATATAAGGCTCTTATCTGTGTGGCGATCATCAAATCTGCTCGATAAGCCGCGGCTTGTGGATCATACTGCgggctttatttttcttccaggatCGTTTATTAAATAACATCGGGATCCCCAAGACGCACAGGCTGTGTGGCCTTCATAGACACCTGTAGTAATTCATGGTTCATCATCAGTTCATCAATTAATTCACATTCAAGCTGCTTCTCTGTTTCTTCAAATTGGGTTTGcttgcctttttgttttggctTGGACACAGTGCACAatggtttttaatcttttttttattattattattattatggtaaaTATGATTTCCTACTCCTAAATGTAACACTAGGCCTTGCTCAGTATTGCTCAGTATTgctcactgagacactgccaCCCATCCTTTGCTGTTGATAATCATGTACAATAAATGTTCATGTTTATTAGAGATCCAGATTAAGTGGGTGTTCCTGTGTGTTAAAATAGTTTTGGTCCTGTTGCAATGTAGAAACACCTGcatgtatattgtatgtgttcATGTCTTTCGTTGGCCTGTTTGACCCCGCTCTGAGCAGAGAAGATGGAAAACGCAAAATTCAGAATGGGGTATAAGGTGGATTTATTCTTGAATTGTATGAAAAGAAAGCATATGCATCCATTTTGTTGCATGTCAGCCTTCTCTGTCAGATACTCTCCTCAGGCATTGTCTAAGAAAGGGACGTCTTTAACCCTCAAGAGCAGTAACGCTTGTATGTACAATTAAAAGGTGTTTGAGAGATTTCAAACAGGCAGCTCTGGGGACGGCTCTGCTGCTAGAGGCTATGTGAGCAGTTCGACGGCTATCAAtggcttttttttcctcctaatCAGCAGGAAACCTACAAGGATCGATCGTGTGGCAGAATGACAGAGCAGTTTCTAGTGCTGACTATAGCCCTTTGGATGCTGGCACAGTATTACTCCTCCTGTGGtcgtttattttattgttttgtgctaATTTATACAAGGTCCTGAAATGCCATCTAGTGGACTGCTTGCATCTGTGCAGCAGAAAAAAAGGACGAGAAgagattcattcattttaacctTCTAATTAAACGAGAGAAGCTACAATTTGATATCTAAATATACTCGCATAGCTGGCTTCAAAAGCATAGCCCATATGCTGGTTATCTTGCTGCATGTGCATTCCgctgaaagtttaaaaataatatttttttgaaaaaggGATTTCTCAGCCATAGCAGTATTTTCTTGAATGCTGTAAATCTAGATCTTGGTATATAGTCTCCCATTATACTAGGCAAAATAAAGATTGCATTACTACTATATTTTTTCCAATCTCCTGGATAGTTTGTGAACTACACACGCTGTGGactggtgtgtgcgtgtgtgtgtgttcacccTCTGCAGTTCACAGAGACATATCAATGGCCTCCCGTCTCCCCAGACACCGACCAGAGGAGCACTAGGGCTATCTTTGTTAATGCCTGAATTTCTGTAAATAGAAACAtactcattattttttaatgcaaccttctcttttattttttaagcctaatttgtttattaatttattctgtatgTGTCTCCATTTTGTAACTTTGATTGTCTGTAGTGGTACGTTAATTTCATACCAGAAACCCATTAgagaataaaaactaaatattaaaaaaaaataataataaagttgatTTTGCCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3193 True 4419 lncRNA 0.42 2 15373195 15377637

Neighbor

gene id symbol gene type direction distance location
AMCG00003701 LOC106607895,LOC106571478 coding upstream 2329 15353478 ~ 15370866 (+)
AMCG00003705 NA coding upstream 38877 15334001 ~ 15334318 (+)
AMCG00003703 NA coding upstream 83619 15255056 ~ 15289576 (+)
AMCG00003694 NA coding upstream 216802 15144622 ~ 15156393 (+)
AMCG00003693 NA coding upstream 251629 15104744 ~ 15121566 (+)
AMCG00003706 NA coding downstream 17176 15394813 ~ 15398406 (+)
AMCG00003711 NA coding downstream 348805 15726442 ~ 15751861 (+)
AMCG00003713 NA coding downstream 693915 16071552 ~ 16079315 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding downstream 759209 16136846 ~ 16161082 (+)
AMCG00003718 NA coding downstream 830210 16207847 ~ 16210277 (+)
G2571 NA non-coding upstream 242995 15128596 ~ 15130200 (+)
G2564 NA non-coding upstream 256223 15115705 ~ 15116972 (+)
G2563 NA non-coding upstream 258358 15114629 ~ 15114837 (+)
G2517 NA non-coding upstream 342827 15006346 ~ 15030368 (+)
G2446 NA non-coding upstream 951885 14420731 ~ 14421310 (+)
G2641 NA non-coding downstream 39339 15416976 ~ 15419869 (+)
G2681 NA non-coding downstream 526846 15904483 ~ 15904820 (+)
G2698 NA non-coding downstream 655071 16032708 ~ 16032935 (+)
G2719 NA non-coding downstream 703545 16081182 ~ 16084866 (+)
G2721 NA non-coding downstream 707503 16085140 ~ 16085992 (+)
AMCG00003702 NA other upstream 54967 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 506437 14851752 ~ 14866758 (+)
G2440 NA other upstream 953463 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 2166356 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 2330598 13025569 ~ 13042597 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 647234 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 1654933 17032570 ~ 17042594 (+)
G3047 NA other downstream 2304180 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 2754282 18131919 ~ 18142633 (+)
G3108 NA other downstream 2769023 18146660 ~ 18152314 (+)

Expression


Co-expression Network