G2641


Basic Information

Item Value
gene id G2641
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15416976 ~ 15419869 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3217
ttgtgctgcaaagagccaaaaaaaaaaaataaagaaaaaaaatacaggaaatcGCCTTacagttttttcttcttaaaaaaggaaaataaaaaataaaataaaaataaaaaataacaagcaaacTGCAAATGCTGCAGGAAAATCCAAAGTCTTCATCTATCTCCTTTAGGAAactctttgcattttattctctGTTAAACAAGCACAATGTCATTGGAGAGCAAAATGGGTACAGTATGTAGgagttttcttcttttcttgaatagaagaaaaaaaagaaaaaaaaagaaggaacaaCCCATAAAACAATCCTAGTCCCACTTCGTGATAAAGTTTCAGAAACATCGCCCCAAACTCACAGGAGCAAACCTACAGAGAACAGGAGAGTTGGCTTTTCGGGAATACCTTGATGTCTTTGTTAACCGAGGAATTAATGGTTTCTTACGTTTTGCCTGTTTGGACAACGAAGCTCAGTAGGAGATAAAATGACAATCTAATATTAGCAAAGGagtcagtgtctgtgtcctCGAGCCCATCGCAATCCCCAGTTTTCATGAACACTGCTACATCGTCCTGTATGTTATATCCCACCAAATGACTTCAGGTTAATAAATTaggtcattaaaacaataaattaaactggtttaattttttttttaccccaacattttttttttttctttcggcAAGTGCCACTCAAGTATTTACAACAATACTTGCAAGTCCCACTACAAAACAAgctaacaatttattttcacattaaacaaaaaaaaaaaatgacaaacaggTAATTACTATATAAAAGTGCCAAGACCTGtcaaaatgaatattaattacatttttttatacaatagAAAGATAAAGTTACACCCAAGACAAACTACCACAAACCCCCAGCTTATTTCTGACAACATTCCAGTAGTTTTGACatcagaaacatttttaaaaaggagaaaaaaaatgaaaaaagaaaaaaagaaaaagaaagccatGCGGTTCAAAACACTCTCAGAAAGACCCACACTTCCTGCTGCTATTCTATGCAATGCAGTCTATTAAAATCTTATCAAGGTGAAGTACACAGATGTGAAAATTGCCTTTCAGAGAGGCTGAGCGATCAGCGGATTCAAAACAaggcaacaaacaaaacaaatgaaaaaacgaaaacaaaacaaacaaaggtacAATGAGATGgtcttcctttttcctttttttttccgcCTCAAAATCACAAGCAATCAAGCATGAACATGGAATGCCTGGTTAGCCGTTTCAATTCCAGATAaaatctctctttctcagttataaatacattcaacaggaaacaaaacatagaaaattatatatatatatatttatatatatatgtacaatactttttttgtttgttttagcataaaatatttacataaatattccTATAATGATAACATCTCAGGAAGCAtaatctctttattttatttttaaattctcagctgcaaagaaaaacaaaaaggtgctTGAGTAATATACAATTAAGCAGCTCCCGAGCAAGGAAGCAATTTCTAACTCTGCATaaccagtaaaataaaaacaaacaaactaaaataaaatcttgactttttgttgtttgtgtgtgtgtgtgtgcatgtgtgtgtgtgtagtatattatattttgcttcCAAATGTTCAGACCCCCCGTGACAAGATCCATCGATACTTACAATTGACCAAAACTGGGCTGCCACCTTCTACTGTCCGACACAAACACATCAAGATCCAGTGCTCAAACACAGAAACCAGTAGGCCTCGAAAATGTTGCGTTGTGTTTCAAAATGGTTTGCTACCTGTCCCTGCAGAACtggccatttaaaaaacaaagaagcagCACACATTACAATTTATATGTTCAGCATCAACCCACccttttttcctgtatttttaaatgttattttatgtattattatttttaagatgcaTCTTTGAGAGCGAAAGCCCTTGGTTTTTGTAAAGACAGTTTTGCCAACTCAGCAGACTTTGCAGATTGCAATCTACGGTAATGTTTctagcaaacaaaaaaagtaaaatcattaaaagatgGCACCGTGTCGTCCTTTCAGTTCTTTAGTGGGATAGGCTTCGTCAAAAGCAGTTTTCAGAGCAGCAAAGACAGCCAATGTCTTGGGGGGCCCTGTCGATTAGGCTCCCTAGTCTCAAACTCGGCCTGAAAGACTCTCGCTTCCAAAGGGTCCACAGTCCCTCAACAGCACAATTACGAGCATACACAACTTTCAAGACTTTTAGAACTTTGGTGCTACAGTGTTCTAGAAAACACTTGGTCAGAATATCGTGGCGAAACAAAGCAGGAATGCGATCGTCTTGACACGCAACAGGAGACGCCCTGTGCTATCCCAGAGCCGTACGAGGTTACAAACCCAACACAATCCATCAAGCAAGTGCGAAATcaatttattattattcgtttTGTTTCTGTGGTGATTTTTTGTGGTTTCGTttgcatttattcatgtatttaattacttttttttcttttagtttttctgtgaaAAGTTCAgtcattttttctcctttttttaaatttaaaatttgtttttttattattatttttattattattaatatatactcTGTGCCCTAGAAAGTGCCATGCCTCCTCACACAGTTTGGTAGAAATTGTCCGCCTgcaggttgttttgtttctgcatgcTGTAGTAGCCGCTGTATCTGGAGTCTGGGTCCGCCATGCGAAGCATCCTCTGAGGACTGTCCACCTGAACCATGGTGCCCTTCTTACAGTCCACATACACCAGCTGGTTGTTCAGACAGGTGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3217 True 2832 lncRNA 0.33 3 15416976 15419869

Neighbor

gene id symbol gene type direction distance location
AMCG00003706 NA coding upstream 18570 15394813 ~ 15398406 (+)
AMCG00003701 LOC106607895,LOC106571478 coding upstream 46110 15353478 ~ 15370866 (+)
AMCG00003705 NA coding upstream 82658 15334001 ~ 15334318 (+)
AMCG00003703 NA coding upstream 127400 15255056 ~ 15289576 (+)
AMCG00003694 NA coding upstream 260583 15144622 ~ 15156393 (+)
AMCG00003711 NA coding downstream 306573 15726442 ~ 15751861 (+)
AMCG00003713 NA coding downstream 651683 16071552 ~ 16079315 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding downstream 716977 16136846 ~ 16161082 (+)
AMCG00003718 NA coding downstream 787978 16207847 ~ 16210277 (+)
AMCG00003720 mcm3 coding downstream 838585 16258454 ~ 16265698 (+)
G2619 NA non-coding upstream 39339 15373195 ~ 15377637 (+)
G2571 NA non-coding upstream 286776 15128596 ~ 15130200 (+)
G2564 NA non-coding upstream 300004 15115705 ~ 15116972 (+)
G2563 NA non-coding upstream 302139 15114629 ~ 15114837 (+)
G2517 NA non-coding upstream 386608 15006346 ~ 15030368 (+)
G2681 NA non-coding downstream 484614 15904483 ~ 15904820 (+)
G2698 NA non-coding downstream 612839 16032708 ~ 16032935 (+)
G2719 NA non-coding downstream 661313 16081182 ~ 16084866 (+)
G2721 NA non-coding downstream 665271 16085140 ~ 16085992 (+)
G2755 NA non-coding downstream 810066 16229935 ~ 16231498 (+)
AMCG00003702 NA other upstream 98748 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 550218 14851752 ~ 14866758 (+)
G2440 NA other upstream 997244 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 2210137 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 2374379 13025569 ~ 13042597 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 605002 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 1612701 17032570 ~ 17042594 (+)
G3047 NA other downstream 2261948 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 2712050 18131919 ~ 18142633 (+)
G3108 NA other downstream 2726791 18146660 ~ 18152314 (+)

Expression


Co-expression Network