G2665 (crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300)


Basic Information

Item Value
gene id G2665
gene name crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15515673 ~ 15591730 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3242
GGCCGGTGGAGGAGGAGAGCCAGCAACTTGAGACGCAGGCACAGCAAATGCGCGACGGCAGGACGGCTCGTATCTGACCAGGCTTAGTCCACTCCAGCCGGCACCACAGCCACAGCAGGACAAAGACCGGGCATTGCCGGTGGGGCTGAGCAGAAACATCTCGCCTTGCCTGCCCACACCATAAAGACAGGGAAAGCAGAAAAGCCCAACAGAAACCCAACGCACAGGCGGATACATGACTGCAGAAGAGAAAGTTTGTCGTGGTGGGGAGAAGCAGGAACAAACTTTGTCCTGTGCCGCATAAACCATGCAGTGTCCTTCGAGTGTGGGAtaatttttgtcctttttttgttgttgttttttttggattGCTTTCCATTTGGTCGGCTTGCTCCTATTCTTGGGAAAGAAGCCGTGTTTGAGTTGACACATTACattctttccatttttgaaaaaaaaaagtttcacccaGCGGGGCAATGAAAGCGCAGACCTAACCAGCATCCTACTGGAACCGTGTacttgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgccatCTCTAGTGctacacttgtgtgtgtgtgagtgagtgagtgagtgagtgtgtgtgtgtggctggcATTGCTGTTGTTACTGTTGCGGAGgggcttgttttttgtttttgttttttgctggcGGATACATAATTACAAATGGCCTCTTCAAGGATGTACCTGGTTGCAAAATGTATGCTGCTCTCCCAGCTCCTGCTCCTGGTCGCCAAAAGCAGCCGGGCTCTACTGTGCCTGCCCTGCGACGAGTCCAAGTGCGAGGAGCCCCGCCACTGCCCCGGCGCCGTGGTGCCCGGCATCTGCGGCTGCTGCTCGGTGTGCGCCCGGCAGAGGAACGAGAGCTGCGGGGGAGTTTACGGACTGTACGGGACCTGCGACCGGGGGCTGCGGTGCGTCATACGACCCCCGTTGGACGGCGGCTCCATCACCCAGTACGAGGTCGGGCTGTGTGAAGATGAAAACTGGGGTGATGACCAGCTACTTGGATTTGAACCTTGCAATGAGAATCTGATAACGGGCTGCAACATAATCAATGGGAAATGTGAGTGCGACAGCATTCGGACCTGCAATAATCCGTTCGAGTTTCCCAGCCAGGAGATGTGTCAATCAGCGCTGAAGAGAATCGAAGATGAGAAGCCGGACTGCTCCAAGGCGCGCTGCGAGGTGCAGTTTTCACCCCGCTGCCCTGAAGATTCTGTCTTGATCGAGGGGTACGCACCCCCCGGAGAATGCTGTCCCCTGCCCAGCCGCTGCGTCTGCAACCCTGCTGGCTGCCTGCGGAAAGTCTGCCAGCCTGGCTATCTCAACATCCTGGTCTCCAAGGCTTCTGGGAAACCCGGGGAGTGCTGCGATCTGTATGAGTGCAAACCAGTCTTTAGTGTGGACTGCAGCACAGTGGAGTGTCCCCCTGTACAGCAGGTCCAGTGCCCAGCAGACAGCTACGAGACCCAGGTCAGGCTCACTGCTGACGGCTGCTGCACCCTGCCCACCAGGTG

Function

symbol description
crim1 Predicted to enable insulin-like growth factor binding activity and serine-type endopeptidase inhibitor activity. Acts upstream of or within blood vessel development; notochord morphogenesis; and somitogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; intermediate cell mass of mesoderm; notochord; otic vesicle; and posterior segment eye. Used to study cataract and microphthalmia. Orthologous to human CRIM1 (cysteine rich transmembrane BMP regulator 1).

NR:

description
PREDICTED: cysteine-rich motor neuron 1 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3242 True 1561 TUCP 0.55 4 15515673 15591730

Neighbor

gene id symbol gene type direction distance location
AMCG00003708 crim1,LOC107582940,LOC107662656,LOC107730553,LOC107679775 coding downstream 28472 15478494 ~ 15487201 (-)
AMCG00003707 NA coding downstream 59422 15419692 ~ 15456251 (-)
AMCG00003704 NA coding downstream 126752 15381456 ~ 15388921 (-)
AMCG00003697 NA coding downstream 344341 15161825 ~ 15171332 (-)
AMCG00003699 NA coding downstream 356356 15157494 ~ 15159317 (-)
AMCG00003714 ints9 coding upstream 450998 16042728 ~ 16055653 (-)
AMCG00003717 NA coding upstream 503416 16095146 ~ 16116740 (-)
AMCG00003716 NA coding upstream 584041 16175771 ~ 16181167 (-)
AMCG00003722 NA coding upstream 620935 16212665 ~ 16222773 (-)
AMCG00003721 NA coding upstream 637927 16229657 ~ 16245607 (-)
G2661 NA non-coding downstream 5592 15509873 ~ 15510081 (-)
G2637 NA non-coding downstream 136692 15378758 ~ 15378981 (-)
G2636 NA non-coding downstream 137118 15378197 ~ 15378555 (-)
G2615 NA non-coding downstream 197463 15315396 ~ 15318210 (-)
G2565 NA non-coding downstream 399490 15115983 ~ 15116183 (-)
G2682 NA non-coding upstream 312757 15904487 ~ 15904821 (-)
G2697 NA non-coding upstream 437694 16029424 ~ 16030186 (-)
G2699 NA non-coding upstream 440957 16032687 ~ 16032922 (-)
G2720 NA non-coding upstream 487669 16079399 ~ 16084866 (-)
G2722 NA non-coding upstream 493385 16085115 ~ 16085995 (-)
G2500 NA other downstream 704342 14810786 ~ 14811331 (-)
G2373 esrrg other downstream 1502652 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 1783634 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 2399013 13071796 ~ 13116660 (-)
G2236 NA other downstream 2480184 13034953 ~ 13035489 (-)
AMCG00003734 NA other upstream 1015680 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 1276602 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 1545518 17137248 ~ 17140382 (-)
G3181 NA other upstream 2350847 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 2543649 18135379 ~ 18142681 (-)

Expression


Co-expression Network