G2720


Basic Information

Item Value
gene id G2720
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16079399 ~ 16084866 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3305
gccaagttcataaaataattttcattaagTAACTGGAGAgcctcaaataaaaaaaaggatgttTGGGTCATTATATCGGTCATCACAGATGACCATCCTTATGGTTCTTTGTGGGGGCTTTACGGATAATCCTCaccttctccccccccccaaaaaaaaaaaaccccactGATATAAAGTAGGAATAATTAGTACTAATTCAATAGGAATACCTTAGTAAGTCCCTTAGTAgctcaaaatgaattaaaatctCCTTAACCTAAAACTCCAGTCTGGTGTCATGAAGCGATGGATTACATTGAAGTGAAACACCTTCTCTCCACGTGATTAATGCCTTCACAGCACTGGGGCACACAACGGCCCGGCGATTTCATCATACAGTCACACAGATTAGTGAATGTGCACTGTGAACTGTAACAGCCTCGGAAAGGAAAAGTGGAGCTGGACCAAGTTGAACATATAAGGGTCTGCAGTtagtcagtctctctctctctctgcttcagTTTTAGGCTCTGCTTTTGCTACAGACCCTCTTCTCCGACACCGAGTGAAAAGATGTGCTTCTGCATTAATGAAGCCAGATCCCCCAGTAAGACAACGCCTCCAGGACTGCACTCAATCTGCCCCCCCTCGTCTGACAGCGGCCTTGGACAGTGTTTTATAAACTGATTGATGACAAGAGGGAGGGAAGGGCGAGCGGagtcgtttctccagatagtcATTAGCATTAGTCTTTTCGTGATTGTGTTCAATTTAGTCACATTGTGCAGCCTGTACTTCAGAGACAGCGGTGCGGAGAaacatccatttatttatatagagtGTAGAGCCACTCGCGTGCCACAGTGATGCATCTCACATGCAGCAACGGTTTTAATAGCTTTCCTAATCTGCGTTGTGGAAGCCATCATgtgcctgcccccccccacccctagcCACACATCATCTGCTTCATCCCTCACAAAGCACCACAGCTGCTCTGACACATGACATGTGGGGATTTTAAAACCCTCTCTGTATACAGGAAACTGGAAACTTGAGGTCAGGATTAGACCGGAAGATTGATCGAGGAAATGTGACCTGGATCAAATGGAAATGACATCATCACAACTGTGGGATAATCTCAGGATGAGTCTTCGGCCGAGGAGTAACAACGAAACAAATCACAGGAGCTTGGCCTACACAATCTAGAAACACACACTATGAGGACAGACTCCTTTCTGCGATTAACCACAgaagcaaaaaaacatctaatctTCTCCTCCTGAAGGCACACATGCAAAGACCAGTTACACCAGGTCAGATAAAGACTCGGACAACACAGAACAAGCCCCAGCTGGCCAATCCGGCTAGGAAGAGTGGACAGGAGGAAAATCTGTGAATGTCTCTGCCCCCCGTACCCCCACTTCTcctattttatgaaaatgtatccaaagAACATGGCAGACACCCGACTACTACTAAAATTAAGTCGTATACACTGAACATGATAAAACGTTGGAAGTGCGAGATCTGATGCAACCATAAAGAGCTCGGACAGGACTAATACTGCGTTCCCTGATAATATATTGCAAGGCTTTTGTCGTTTCGGGCTCCTAGCAGTTTCAGGACTCCCGTTTCGCCCAAGCTAAGGAAAAGGCTACATTAAATGTCCCTTAGTGGCCAGCTGTTAGCAATGGGGTGGGTGGTcgattaaatgaatgaatcctTCCAGGGGTGGGTAACTCTAAAGTGACTTAATAAGTGCAAATAATCCCTGTGAGAAATGATAAAAGAGTTAGTCTGGATCTGGGAAGactaacataaataaacactgttcaCACCTCAGAGTTCAATGTGGTAGTTCCCCAGATCCAGGTTCTCTTCTGATCTTTCTTGGAAATAGAGTCACAGtcgaaagtattcacaccctgtGTTTGAACACCGTGCAGTGATTGGTTTGGTATGAGAAGCGTTCTCTTGTATGTTTGTCAGAGCTTCTttaacactgattcagcccagAGAGAATGGCACCGGACTAAAGTGAGTCAAGACAGGGCGGGTGTATAAACTTTGGACTGCCACTGTGCTGATTGCCATAGACTTGTGTTTGACTGCACTATAAATCTATGGGGCTTCAGAGGAAAGTGTGGAAAACATTGAAGAGCGTTCTCCTGTGTTTCTATGACTGACGTATGGGCTGCTCTCCTTAGTGAGGGGCTGTGTGTTCCCCTGTGTCCTGGAGAGGGGATGCTTTGCCACAAAATATCTTACAGttagaaacacaaacaggcagACTGACATTAcatcaaaatggaaaaacaaaaccaacacaaaagTCAAACTGTTCAAATAAcaaaatccaaacaaacaaacaaacaaaaaaaaaaaacctggtaTTACTCAATGTAATAACATTTCCTGCTTTGCAGAATCGTATCAACGGAACATAAACGaaacaaaccttaaaaaaatacaaatacatcgTCTGATTTTTAgaacagtcttttttttctcttaagaTACATATTTGATACAGAACCAAGCGCTAGGTTACTTGATAGCAGAGCTTCAAAGAATCTCAAGCTCTGAAGCAGCAGAAAGATTTACCAGTCAGCTTAGCTGTCATTCAATAGCTATTACTttttaggttaaaaaaaacccaaacgaaaaacaaaaaaggggttatttcacattaaaagcAGCATCCTATGGGCCGGGGGGAACGGCTTGGGGAGGAAATTGTATTTAGTGGCTTAATTCCCCCTCTCCTGCGTACTATAGGACCCCCCCTTTCTCTGTTCCTATACGTCTCTCTCCAGTCATGAAGGATTCCTCGATTGGCTGTCAGACGACCCCAGCCACCAATCGGAAGGATATTAAAGCAGCAGGAGCTCCTCCCACAGCAAGCTGCCTACACCAATCAGGGAAGCCCATTGGCGGTGGCAGGAACTCAACACTGGCCTATCTGATAGAGGCTTAGCGTGCTAAATTGgactgcttttttattattaacattataattttaacatttcGAAAAGCACTTTCGGCAGGAGCACTATTTTCGGACAATCTTCTAGCACACCCAGCTGGTACACGTGCATAAAAGACACGCGGGAACATGAATGTCATAACATGAAGCAAATGAGAAAGCCCTGCGCGGCTTAAATGGCTTTGATTGGATGTCTAGTTAATTTCCTCTGTGCCTCCTACATGTccccatgtttgtttttgtgcactGTGACCAGTTTGTCCATTTCCCCAGCCAAAGTGTTCCTGCAACGTTACTTAGTCTGAGGGGGAGAGTCTTTTCCGAGTCTTAAACTCGCTGCCGAGCAGCTTATCGACAAAATCGACAAATCTTGCATTTTAAAGAGTTGTCCGTGAAGCAACACAAACGTAGCGGGCAGATTCATCTGAGGGGCGAGGAAGATGGAGAGGACGACAGCAGCAGACTATTAGGCTTTAGAAGGATAACGTGGTTTACAGAAATTAGGTCAAATTACAATCAACTAATACTCAGGTGATTCTTTCTTGCACTCAAATGGAAATGCATTGAACACGTCGCAATTATTTAGACACTCAGCAGAGCCAGTTACCAGCCATCTTGAAACCTCTGACGACATTGTTAATGTCCGAAGCGATCATTTTGCCTTTCTTTATTCAACCCGTACTGGCGGCGTCCCAACACTTCATTCGTTTTTATAAAACAGGCACTAAATACTCTAGAAATCAAGAGCAATTTGAcaatgactttaaaataaacatttttcaagTAAGGAGGTAAAAATTATACGcgtttacacacacatatacgtAACTCTTGAGCGAGCATCACACTTCAGAAAATCTGTGCTTTCCTGAAGACATGGCGATCACTTCAATACTATCAGTTTAAACTTTAAAGGCAGGGTgaattggaagaaaaaaaaaaaaaaaaaaaaacctaagtATAACTTAATTTAACCACACAGTGATCCACACGGATCTAAAACAACAGAATTCATGATTTCCTGCTGTGCGGTACGGACCTACAACACTTTTGTCCTCATATCTTGTTCAGTCCAACAGCTGGACACCAAAAAACCTCATATTGTCCTTCTACAGGTCTCCACCAATGAAAAGGTGTTTTGTTCTTCTAATTCCTTGTGTTATCAATCTCCTCGATCTAGCATTAACAACAGTTCAGTTGTAACAGTGAAGGAAGTTATTGCTTTCTCCTGCTCAGGAGTCAGTCTGAGAGACGCTTCTGTCTCTGCACTCGAATCAGAGCGTGTGTTGTTACAGGCGTGTGCGGGCTGCAACACATTCTATAGAGGAATCGGTtgattggggggaggggggggcaatGCTATttctttccttaaaaaaaatagaatcagAGAACGGCATCTAATTAGCATCCCGGGGCTCTCCAAGCAGTACATATGAAACAGAAGACACAGAAGTGAAGATCActgtagttttatatatttttgttaggCTTTCACTCAACCAGACTAAAACTGGTGATAATCAATCGTTAGAAGCTGGGGAGCATCTGTCATTTACTGTTCACATGCCTTTTCAAATAAGATTGATGGTCTGGGGTATTCGGGGGTCCCAACGCTTctgattatttcattatttgacGCACTTTGAGAACCTGTATCACccgaggggtgggggggtcaccTGAGGTGGAAACCGAAAGGAACAAGAACGGACAGAATTGACAGCAGACAAACCGAGCTGGCAGACGCAAACGACgacaatattacaaaataaatacaaataaaaatcccaCTCTCTTAGCCTAATCTCTCCCAGCTGTAACTTCTCCTTCCGGGTCTTGGTAAAGACAGGATACTTTCCCCGGCACACTGGGAGAGTCTCGGAAGGGCCGGAGATTCCCTCATCTATAAACCGCGTTGTCCTTCTCCGGAGGAGAGCAGACGCACGGGCAAGCACAGCAGGAAGCACGGCGATATGGGGCAGGACGACACTCAACACTGCAGCTCACGGGACGCAGGGCAGagggggcagggagagaggaggtgGCGGGCGATGCTGTGGGGCAGGGTCACCGTTCTGCCCTCGATTATCACCGGCAGGAGGGGGAGGTCTGTTATTTGTCACGCTGAGGCGTGTGAAAGCCAAGGCAGGCGGCACCATGCCAAAGGGAGGTATGTAGagtttaataaaaaatctttttttttttaatagacgAGAgcacaatacatgttttcttgttaCACTGATCTgcggagggaggcagggaggtgAGATGGGGATTTTGTGGGTGTGGGGGGCGGTGGGAGTCGAATATACGAAGGACAGGCAGCTGATCTAAAATCTATGGCCGAAGCATAGTTTTGGTCACCATGTTACGcctcctcccaccccccacctcccttccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3305 True 5468 lncRNA 0.45 1 16079399 16084866

Neighbor

gene id symbol gene type direction distance location
AMCG00003714 ints9 coding downstream 23746 16042728 ~ 16055653 (-)
AMCG00003710 crim1,LOC107719193,LOC107679775,LOC107602268,LOC107662656,LOC107730201 coding downstream 488376 15590622 ~ 15591023 (-)
AMCG00003709 crim1,LOC107730553,LOC107679775,LOC107662656,LOC106601300 coding downstream 559806 15515672 ~ 15519593 (-)
AMCG00003708 crim1,LOC107582940,LOC107662656,LOC107730553,LOC107679775 coding downstream 592198 15478494 ~ 15487201 (-)
AMCG00003707 NA coding downstream 623148 15419692 ~ 15456251 (-)
AMCG00003717 NA coding upstream 10280 16095146 ~ 16116740 (-)
AMCG00003716 NA coding upstream 90905 16175771 ~ 16181167 (-)
AMCG00003722 NA coding upstream 127799 16212665 ~ 16222773 (-)
AMCG00003721 NA coding upstream 144791 16229657 ~ 16245607 (-)
AMCG00003723 NA coding upstream 166821 16251687 ~ 16258335 (-)
G2699 NA non-coding downstream 46477 16032687 ~ 16032922 (-)
G2697 NA non-coding downstream 49213 16029424 ~ 16030186 (-)
G2682 NA non-coding downstream 174578 15904487 ~ 15904821 (-)
G2661 NA non-coding downstream 569318 15509873 ~ 15510081 (-)
G2637 NA non-coding downstream 700418 15378758 ~ 15378981 (-)
G2722 NA non-coding upstream 249 16085115 ~ 16085995 (-)
G2765 NA non-coding upstream 163069 16247935 ~ 16250483 (-)
G2832 NA non-coding upstream 501196 16586062 ~ 16586266 (-)
G2834 NA non-coding upstream 503203 16588069 ~ 16588293 (-)
G2903 NA non-coding upstream 911924 16996790 ~ 16997604 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 487669 15515673 ~ 15591730 (-)
G2500 NA other downstream 1268068 14810786 ~ 14811331 (-)
G2373 esrrg other downstream 2066378 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 2347360 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 2962739 13071796 ~ 13116660 (-)
AMCG00003734 NA other upstream 522544 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 783466 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 1052382 17137248 ~ 17140382 (-)
G3181 NA other upstream 1857711 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 2050513 18135379 ~ 18142681 (-)

Expression


Co-expression Network