G2861


Basic Information

Item Value
gene id G2861
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16868299 ~ 16934020 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3493
CCTTGTTTATTCAAGATAATTTCTTGCAAACTCAGGGgatttgatatatataaatttCTTCTCAAgacaaaatgaaagacaaataaattcactttgacattaaaaaaaaaaaaaaaatcaacacttCTTCTCACAACCATTTGTGAACAGACATTTAGATCTCCAAAACTGACAATCTCTTAACGGAATACTGCGTACGACACCGCGTGATGAATTCAGAGTTCAAAGATCAGACCGTTACTGTGGGGATGTGTATGGAGTGCGTCAAAAAACACTAACAGAGACACAGAGTTCACTGTGACCGGCGCTCTGTCTGTGAGCCACAACTCGTCCACATTTGCTTTAATACACCAGACCCTACAATGTGATTCAATGGCAGGTGCttttgcagaaaaataataataatatatttatatatatatttatatatatttatatgaaatggGTTTAGCAACTGTACAGTTTTTAATGCATAGCACTTTGCAAACCATAATgggtaaataaattataaaatacaagcAACTTTGTGGAACATAAGCATCCTgagtttacaaataaattatgtcCTTCATACTTTACTATggatcggggggggggggttaatcaCAGCAGCTCCAGCTGTTATAGGGTGAAGGCCAATGAGCAGGTGGGGTAAATTTAGTATAGAAAACAagctatatataaacattaagaGCAGAAACTGCCTCAAGCACCATATATCAACAAGTATTAAGGAAGTGTTCGCACCACTGCTGTGTGACCACACAGAGTCGACTCACCGGCCTGGACGCTGTCTTTACACAGCAAGAGACATTTGAACTGGATTCTCCTTTGATTCATGCGACAGGGACACGATCAGCTGGGCAATCCAGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3493 True 876 lncRNA 0.38 2 16868299 16934020

Neighbor

gene id symbol gene type direction distance location
AMCG00003739 NA coding upstream 17460 16847794 ~ 16850839 (+)
AMCG00003738 NA coding upstream 168951 16693570 ~ 16699348 (+)
AMCG00003737 NA coding upstream 207352 16651834 ~ 16660947 (+)
AMCG00003733 kif28p coding upstream 278800 16576388 ~ 16589499 (+)
AMCG00003729 NA coding upstream 298596 16547072 ~ 16569703 (+)
AMCG00003745 hnrnpu,LOC107689318,LOC107729300,LOC107693167 coding downstream 81644 17015664 ~ 17029628 (+)
AMCG00003750 NA coding downstream 144065 17078085 ~ 17104248 (+)
AMCG00003749 hpcal1,LOC106607246,LOC105015955,LOC107565203 coding downstream 170244 17104264 ~ 17108278 (+)
AMCG00003752 NA coding downstream 227720 17161740 ~ 17205182 (+)
AMCG00003755 NA coding downstream 595377 17529397 ~ 17552735 (+)
G2836 NA non-coding upstream 268970 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 270930 16593264 ~ 16597369 (+)
G2797 NA non-coding upstream 437744 16429034 ~ 16430555 (+)
G2755 NA non-coding upstream 636801 16229935 ~ 16231498 (+)
G2721 NA non-coding upstream 782307 16085140 ~ 16085992 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 274015 17208035 ~ 17210041 (+)
G2967 NA non-coding downstream 320246 17254266 ~ 17256450 (+)
G3265 NA non-coding downstream 1504786 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 1610964 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 2011562 18945582 ~ 18946131 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 828659 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1550071 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 2001541 14851752 ~ 14866758 (+)
G2440 NA other upstream 2448567 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 3661460 13155060 ~ 13206839 (+)
AMCG00003744 NA other downstream 98550 17032570 ~ 17042594 (+)
G3047 NA other downstream 747797 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 1197899 18131919 ~ 18142633 (+)
G3108 NA other downstream 1212640 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2337945 19271965 ~ 19397686 (+)

Expression


Co-expression Network