G2945 (LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785)


Basic Information

Item Value
gene id G2945
gene name LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17208035 ~ 17210041 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3591
GGACAAGAGACAGGGACAGCTACCTGTAGGGCTTGATGATCTTCTCCCCGTAGCGCAGAGCGCCGTCCCAGTCCTGCATGTACAGACACACGCCCATGGCCTGGTACATCATGTGCAGCATGTACACGTTGGTTTCCTCGAACACGGCGCCCATCTTGTCCAGGCTGAGCTCACAGATCTCCAGTAGCTCGCTGGGGGTTTTGTAGTGTTTGGCTCTCCTGAACTCTTCAATGACATTGCGGGCGTATTTCACCGTGTCTCTGATCACCTCTGGCTTAGGAGGGTCACTCAACTTTCGGATTTCCACTTTTGCCTTATCCTGGGCAGAGAGTGACCAAATAAAAGACAGATAGTTAAACATTTCTGCCCGATGCACATTGCAAACAGACCTTTTGTTCATTTGCTTAATGATGACAATGAGAAAAGAACTAGAGTCCTAATGACGACTACGTACAGTGGTCACACGTCTAATAccacaaccccctcccccaaaaatGCATGCAAGCTACACCTTGGATTTGGTGCTACACTCTTTACAGTCACAGTTAAAGAAGTAGGAGTCCCTCAGCCGGTCGTTTCGGTCCTCTGATGGATACAGGAGATCAATGTAGCTGGTGAACACCTGGAGAGAAAGACAAGCAGCTGAG

Function

NR:

description
PREDICTED: N-lysine methyltransferase SMYD2-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3591 True 647 lncRNA 0.49 2 17208035 17210041

Neighbor

gene id symbol gene type direction distance location
AMCG00003752 NA coding upstream 2853 17161740 ~ 17205182 (+)
AMCG00003749 hpcal1,LOC106607246,LOC105015955,LOC107565203 coding upstream 99757 17104264 ~ 17108278 (+)
AMCG00003750 NA coding upstream 103787 17078085 ~ 17104248 (+)
AMCG00003745 hnrnpu,LOC107689318,LOC107729300,LOC107693167 coding upstream 178407 17015664 ~ 17029628 (+)
AMCG00003743 NA coding upstream 330790 16872643 ~ 16877245 (+)
AMCG00003755 NA coding downstream 319356 17529397 ~ 17552735 (+)
AMCG00003759 NA coding downstream 366693 17576734 ~ 17577808 (+)
AMCG00003760 dnajc27,LOC106605409,LOC107733160,LOC107752776,LOC107674103 coding downstream 408383 17618424 ~ 17622439 (+)
AMCG00003761 NA coding downstream 419245 17629286 ~ 17640891 (+)
AMCG00003763 NA coding downstream 528201 17738242 ~ 17778447 (+)
G2861 NA non-coding upstream 274015 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 608706 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 610666 16593264 ~ 16597369 (+)
G2797 NA non-coding upstream 777480 16429034 ~ 16430555 (+)
G2755 NA non-coding upstream 976537 16229935 ~ 16231498 (+)
G2967 NA non-coding downstream 44225 17254266 ~ 17256450 (+)
G3265 NA non-coding downstream 1228765 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 1334943 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1735541 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 1739713 18949754 ~ 18950254 (+)
AMCG00003744 NA other upstream 165441 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 1168395 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1889807 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 2341277 14851752 ~ 14866758 (+)
G2440 NA other upstream 2788303 14418516 ~ 14419732 (+)
G3047 NA other downstream 471776 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 921878 18131919 ~ 18142633 (+)
G3108 NA other downstream 936619 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2061924 19271965 ~ 19397686 (+)
G3751 NA other downstream 4339160 21549201 ~ 21549533 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G80942 LOC108433938,LOC108269891,LOC105908308,LOC107674111,LOC105908357,LOC107733184,LOC107592771,LOC107752785,LOC107697773 non-coding NC_035905.1 CM008308.1 15961507 ~ 15963105 (+)