G2967


Basic Information

Item Value
gene id G2967
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17254266 ~ 17256450 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3614
AACcatttggaatttgtttttattttgcacaagcTTGCATATATACTGCACATACATTCAGTTCAGAGAAGATGGAAGGCACACAAGGCAATTGAACTACTGTATCTTGTAGGTGGTACAAAGCAAAGGTAAAAGTCTGGATAGTATACAAAAagcttaaaacacacaaaataaaataattttatcttccaaacaaaaccatcatagtatattttcagtttctttaattgAGTAGCTGCCAAGCTTATCTTGAAGCAAGAATTTCTGAAATTCTGTTGGCTACTTGCACTGAagtccccctccctctcttttgtCTTTCAGGAATCAGCAAGGGCTCCTTATTGTTTGATTCTACCAATTAATATTACAGTACATCCTTAGTTATAAAAAAATTGTACACCTTCATCAAATAAATTAGgataaattaaaccaataaattatgcaaaatccTCATAACAAattgacaacaacaaaaatccacaaTCAAAATGGCTAgctatgtatatgtatgaatgtgtttaatattttatatatatatatatatatatatatataaaacttatgAATAAACTGAGACATTGTCAGTTGGAATTACTGCACTAGAATCAAATAAGAGttctttaatacaaaataagcgTAATAATGCCATTTACAACATATTGCTAAATCATATGAAGGCAGTGTTCTCTCActttaatatttacatacacGTCAGGGCAAGTGGAAAAACCGCGTTCCcctttatatttctttaaaaccttcactgatttttttttgtctccccATCCCCCCAAAGTTTATATCCATctttacttctttctttttcctctttcttcccACTCACAAATCCTGTAGAATTCCACCTCTACAAAGTAAGAGATTGGCGAATGCAAAACCACTGgatatttaatttttccttcctgcccacccccctcctctcacagaaatacaataatttacagcattttgttaaaaaaaaaaaaaaaaaaaaacctggaaaaaaaaaataccaacaacatcatcaacaacaaatgCTATCTAGGTTTCAAGCAGTTTAGATCATTCAAGTCATTTGAGATCATGTCACCACTGGTTCAGAGGTTTCAGGAGAAAGATGCACAGTTGAAAGTTTGCCATAGTTCCAGCCCTTTAGTAAAAGAATCGTCAGCTTAAATTACCAGCAGGCATCAGACAAAAATCCCGTTGAAGACAGCAACTGAGTTCTTTCAACTGAacatataagtgcaatacacaGTAGTCTGTCCTGGTTTCCACTCATTCCCGAGGGAGGCTTTTCTATGACAACAGTTTAGAATCTGTCACAGGAGGTTTGCCCAGTTTGGGGCAGTTACagaacacagaaaaaacataaacaaaacaaagaaaaaaaaaaaaaagagagagaacggCTGGTTACAATCTCACTATGCAGaatctgctgtgctgtgctttttcCTCCCCTGTTGATTGTGACAACAAGGATGGTCTACTTCAGTTTGTAGTGTGGTTGtgtaataaaatcaaatctCCACCTCCACAGGGTAACTTGAAATGATGTTCACAGTCAACCAGCCCAAacgtttgattttctttcaacaaaaagcatatttttctttaaaggtaTGACTAAACGGATGTATTTGTTGCCAACGCGTATTTCTGTCCTGGGCACAGAGTGTGGGTGGAACTACAGTCTTCTCCTGGCCGGTGTGAGCTCAGTGCAGTATATATTGCATTGGCGAGTCTCCCCTGTCTATAATGAAAACACAGTAGTCTGACAGCAGCAGCTAAACAGGTATGAAGTGGTAGTGGTTACAAGAGTTCCCTCCTCCCAACTGGTCTCGTGTCACGTTCTCCCACAGACGGCTACCGAACCCCACCATAGCTGTTCACACTCCGAGGCACAAACCGCTGTAGTCACAGTAACTGTGCCAAACAGCCACCGATCCCTTCTTACAGACACCCCAGCATCACGCTTTCATTTTCCCCATTTCAAATCTGACCAATagaatataatatagtataatataatatcatataaaaaatgcaaataaaatcaaCCTCTTCACAAAACATAAGCAATTAATCTAAAATAGAAAACAGCATAAAtctaaagtggaaaaaaaatgtaatcacttcacacatgtatgtgtaagtacatgcatgtatgtatgtatatatcttt

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko05230 Central carbon metabolism in cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU3614 True 2185 lncRNA 0.33 1 17254266 17256450

Neighbor

gene id symbol gene type direction distance location
AMCG00003752 NA coding upstream 49084 17161740 ~ 17205182 (+)
AMCG00003749 hpcal1,LOC106607246,LOC105015955,LOC107565203 coding upstream 145988 17104264 ~ 17108278 (+)
AMCG00003750 NA coding upstream 150018 17078085 ~ 17104248 (+)
AMCG00003745 hnrnpu,LOC107689318,LOC107729300,LOC107693167 coding upstream 224638 17015664 ~ 17029628 (+)
AMCG00003743 NA coding upstream 377021 16872643 ~ 16877245 (+)
AMCG00003755 NA coding downstream 272947 17529397 ~ 17552735 (+)
AMCG00003759 NA coding downstream 320284 17576734 ~ 17577808 (+)
AMCG00003760 dnajc27,LOC106605409,LOC107733160,LOC107752776,LOC107674103 coding downstream 361974 17618424 ~ 17622439 (+)
AMCG00003761 NA coding downstream 372836 17629286 ~ 17640891 (+)
AMCG00003763 NA coding downstream 481792 17738242 ~ 17778447 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 44225 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 320246 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 654937 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 656897 16593264 ~ 16597369 (+)
G2797 NA non-coding upstream 823711 16429034 ~ 16430555 (+)
G3265 NA non-coding downstream 1182356 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 1288534 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1689132 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 1693304 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 1694802 18951252 ~ 18971124 (+)
AMCG00003744 NA other upstream 211672 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 1214626 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1936038 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 2387508 14851752 ~ 14866758 (+)
G2440 NA other upstream 2834534 14418516 ~ 14419732 (+)
G3047 NA other downstream 425367 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 875469 18131919 ~ 18142633 (+)
G3108 NA other downstream 890210 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2015515 19271965 ~ 19397686 (+)
G3751 NA other downstream 4292751 21549201 ~ 21549533 (+)

Expression


Co-expression Network