G2972


Basic Information

Item Value
gene id G2972
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17257937 ~ 17259543 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3619
TTTCGAGACTGTAATAGCTGTTTTTTTGGAGTACCACAAATAattatatgatgatgatgatgatgatgtttggAAAGGGTCCAAAGCTTCTTGCGATTCCTAGTCTGGGGTTGTCGGCTCTATTTAGTGTCAGATCCTTCTTTGCTCTACTCATTAATATATCCGCTGGCTATCAAGTCCAGGTGTGTAGTTTGCGATGCGCAGGTGGTTCACTTGTGCTTTAATCTAGACCCTATAGTTTCCTTAGCGTAAAATACTCCTAGGGTGCGGGGATGCAGCTCTCTTTGCCATTTTCCTTGACACAGCAACCTTTAGCCGTAGCTAAGCAACATTGTCATTTCTCACCGAAGCCAGACAGTTTTTTTTGCACAAAAGATGGAAGCTTTCTCACGAGAGACTTTTCTAGCTCCTGAAATCAAACAGTTCCCACTCATGCACAAACGCACACCTATGCACAAGCATAAACTCAAACCAACACGTGGCCAGCGTTCACCTGTCTTGCTCATCCACTGttatttgcacttttttttttcttccaatttgCCCACAGACAAAATTTATAttctaaattataattgtttaatttccaACCTTGTTCAAAGCCAAAATTGTGCAGACACTTAAGATCATAATCATTGGATATTATTTTCGTGAACATCCCTTGAATTTCCCTTTAAATTCTCTGTGATTGAGATTTGTTCAGACAGCAAAAAGATGCAACTAATTGAATGTCTCGGTAAGAAAGAGatttagcattttgtttaattttttttttcttcttgtacaAATTAAACTCTGTATTTATCTTAAAATTATGAAGTACATGTTACATTTGTGAATGACTTCCTGATTTGGcaagttaaaaatgtataaggCTTTTGTATATAAAAGCCCACAGAAGCAATGCAATACTAtgcagttatttaattatagaAGAGATCAAGCTTCATCTCTGAAAAGATTgggttagaaaaaaaaagtgtaagtTATACATTTGACATGatcaaacaaaatgacaataaacATGTGAACCTGGCCAAACAGATGCAGAGATAAATAATCCTCCTCAACTTGGCAGTCTGTAGTACATGATGCATGCAGTCATCTCTGCAGCAGTTAATGCACTGAACTTGTATCCCATCTCAAATAAAACTAGTTTGGTGTCTTGCATAGATTTTGCTGCCTTTGTTAGCAAACAGGTTTGGCAAATATTTGAAaggacagaaaatgaaagaaaaaaaaaacggtctAATAAAGACAGCTGCAAAGAGGCCTTCTCTTTGACCATCTCCattagatgtttgtttgtttttctgttgtggtCATTCTCTCTGCGGTTGTTTGTTCTTAAACTCCAGATGACTTTGGGGAGTGAAAGGCAGGTCATGTGATCTCCTTACCCACTATGGTTTTTGCATTTAGAAATACAGCTGATGAACTGAAATGCTGGACCGCAATTATTGTCAGCACAATGCCTTAAAAACCTGCtgacttttaaattaaacagcacACTGCCGGTGATGGCCTGTCATTATTTTCAAGCCCTGGCAGGATCTGCAGACTTTGGACAAAGCAGACAATATCATGAATGAAGTGCCAACATTTTC

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU3619 True 1607 lncRNA 0.39 1 17257937 17259543

Neighbor

gene id symbol gene type direction distance location
AMCG00003753 NA coding downstream 28756 17205313 ~ 17229181 (-)
AMCG00003746 NA coding downstream 210912 17043634 ~ 17047025 (-)
AMCG00003748 NA coding downstream 244163 16998780 ~ 17013774 (-)
AMCG00003747 kif26b,LOC102197193,LOC107097817 coding downstream 263915 16993119 ~ 16994022 (-)
AMCG00003740 kif26b,kif26ba,LOC107682227,LOC107693166 coding downstream 365058 16883972 ~ 16892879 (-)
AMCG00003754 prox1a,LOC107592773,LOC107752784 coding upstream 16099 17275642 ~ 17291950 (-)
AMCG00003757 rps6kc1 coding upstream 209797 17469340 ~ 17513471 (-)
AMCG00003758 NA coding upstream 254973 17514516 ~ 17526657 (-)
AMCG00003756 NA coding upstream 296414 17555957 ~ 17565405 (-)
AMCG00003762 LOC106608035,LOC105008239 coding upstream 318828 17578371 ~ 17599733 (-)
G2973 NA non-coding downstream 3172 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 215388 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 260333 16996790 ~ 16997604 (-)
G2834 NA non-coding downstream 669644 16588069 ~ 16588293 (-)
G2832 NA non-coding downstream 671671 16586062 ~ 16586266 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 676297 17935840 ~ 17940712 (-)
G3257 NA non-coding upstream 1150327 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 1179558 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 1285810 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 1616039 18875582 ~ 18878573 (-)
AMCG00003751 NA other downstream 117555 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 386462 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 629536 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 1666207 15515673 ~ 15591730 (-)
G2500 NA other downstream 2446606 14810786 ~ 14811331 (-)
G3181 NA other upstream 683034 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 875836 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 887117 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 2102275 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 2165420 19424963 ~ 19425366 (-)

Expression


Co-expression Network