G3108


Basic Information

Item Value
gene id G3108
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18146660 ~ 18152314 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3794
TCGCCTCTGCTGCCCCAAAAGCCTGCACAACACCACAAGTGAGACATGCTCAAGACACATGGACAGAAACACTCACAGACCAAGACCAATACTGTAGAAAAGTGCAGATCTACCACTGGAATTACAGCACCACCACAGGTCCAACACAGCCCAGGCAGGCACAGCGATAGAAAAAGTTGCATGATGGACCCGGATTTGAAATAACTGGATAGACCGATTAAGATTTGGATGAGGTTTTATACTGAACTGCCAACTCAAATAGCTTAGTATGAAATGCAAGTAGTGTTGCTTGCAATGCCTCATTGAATATAAAAGGGACATTGCAAAAGCTTTTGGGTGTTTAACATAACTTTCCATGGCTATCTCCACTCATGTATAACTGCTGCCGTTCCTGAAGAGACAGGAGGGGAATTCCCAGAGTCACaccattaaatgtaaatgttgaatacatacatttacatcacATCTACAGCAAAAGCAAAATGCAGTCAGTCATCTATATAAGAGTGGAGTATAAAAGGAAGCGAACAGGTCTCACCCAGCAGGATCCACAGGAGCCCTGGTCTCGGATCTCCTTGAGGGTGGGGCAGTTGGGCCACTGGTCCCGAGGGTCGAAGCTCTTCGGTAGCTTTATGTCATCAGCGTACTGCACCCTGCAGCGACAGAGGAGGAACGTGACACAGAACTGCATCAGAGGGCAAGAGGACCGCCGTGAGTGTGATCAGCATCAGATCAAAACTGCTCCAACGGAGAGGAGACCTCATGAACAGTTATTTATGACCTAGTTGAAGCTAAAATTTAAAACGTCATTCCTCTGAAGGGGCATTTAAATAAACCTGGGAAGTGTGTGTACAGGggggcagcacagcacagcaaatgGAAGGTTCCAGAACCTGTACAGCGCTCTAACTCACAGGACTAATAAATGTGATACTCCGTCTGCTGTACTGTTAAATCACACAGTTTCTTCAAATTAGGAAGCAAAAGACAAACCCccccaacaaacacaaaacatatatacatctgTGGTTCTTCAATAAAGCACAGATTTACAAAGttcacacaaaacacaggagGCAATCTGACAATCAGCAGCTAACAAACATCAACAAATCCTGGCAGCATTTTGCTCACAAGTCCTGCAGCACATGTGCTCAATCACACCCTGCCCGTCACCGTGAGGAGTGTGCCCTCCAGCTCTCACACTCACATCACTGGCAGTCTGGGGCCCTTCAGCAGAGTCCCACACAGAGTCTTCACATAGCTGAAGTCAGCATTGGGGAAATTGTGTCCATGTTAATCTTGTTGATGTAGTTCACAAGCTCAGGGGACAGGGGTGAGAGGTGTGGCCGGGCTCTCGACCCACACACAGCCGCCAGAACGCACAGCACAGCCAAACGCCACATCCTGTAATCGTGTAAGATCTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3794 True 1429 TUCP 0.47 3 18146660 18152314

Neighbor

gene id symbol gene type direction distance location
AMCG00003771 NA coding upstream 176070 17954298 ~ 17970590 (+)
AMCG00003775 NA coding upstream 196521 17942587 ~ 17950139 (+)
AMCG00003774 LOC107589773 coding upstream 207762 17933862 ~ 17938898 (+)
AMCG00003772 LOC104943415 coding upstream 230597 17899908 ~ 17916063 (+)
AMCG00003773 LOC106571177 coding upstream 257817 17881204 ~ 17888843 (+)
AMCG00003786 NA coding downstream 41969 18194283 ~ 18199528 (+)
AMCG00003787 tram2,LOC106607554 coding downstream 50123 18202437 ~ 18208797 (+)
AMCG00003785 mrpl19 coding downstream 124144 18276458 ~ 18279829 (+)
AMCG00003790 NA coding downstream 136586 18288900 ~ 18320263 (+)
AMCG00003798 NA coding downstream 195577 18347891 ~ 18348131 (+)
G2967 NA non-coding upstream 890210 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 936619 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 1212640 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 1547331 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 1549291 16593264 ~ 16597369 (+)
G3265 NA non-coding downstream 286492 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 392670 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 793268 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 797440 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 798938 18951252 ~ 18971124 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 4027 18131919 ~ 18142633 (+)
G3047 NA other upstream 462672 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 1104066 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 2107020 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 2828432 15301080 ~ 15318228 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 1119651 19271965 ~ 19397686 (+)
G3751 NA other downstream 3396887 21549201 ~ 21549533 (+)
G3771 NA other downstream 3593536 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 3738209 21890523 ~ 21901865 (+)
G3799 med23 other downstream 3770322 21922636 ~ 21923787 (+)

Expression


Co-expression Network