G3170 (odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839)


Basic Information

Item Value
gene id G3170
gene name odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17935840 ~ 17940712 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3865
TGCTTCTCACATAACCTTTATTGAACTAATGATCAAAAATGACGATGGGTTCATTTGTAGATTTCCTCACGGATAGTCAAATCACTCCAGTCACAATACCGGGTATTGACCAGCAGATGTCACTATAGAGAGCATGTATCGAACACATCGAGGCTTCAAATGGTTCAATGCTTCGGAAAGCTTGGTTTCCCCCATCACTGGTATCTCAACTCCTTAATTGAATCAATAATTGGCCTAATCAGAGattcatacacattttaaatcactgtaGACATCAGGttgaatataaaagtatattggGTATCCAAATTCTCCAACTTATCagttattacaattttaaaattaaagcaaattagCTCAATTAAGGTTTAAGTAAATTGATGGTGGATCAAAAATCAGCAGAACACCAGGTCCCCAGGAGCAGGATTGGGAACCACAAACCTACATACTCACCAGACATGTCACCCATTGAGCACATTTGGGATGCTCTGGATTTACATGCATGACTTTTCCAATGCCAGCCAATATCCATTTGCTTCACCCAGCCTTTGAAGAGGAGTAGGACAACATTGCACAGGACATTCAACAGACTGATCAGCTCGACACAAAGGAGATGTCACAGCATGAGGCAAATGGTCACACCCGATATGGGTTTTCTGATCCACACACCTACCCCTTTAAGTACTGTGACCAACAGATACAGATCTGTACTCCCAGTCAAGGGTAAGCCATATATTTAATGGACTAGTTTCCTTAACTAGAATTCTATAAACTTCAGAATTCTTGAATTTGGggtttacatttgtttagtgTAAGACTATGAAAATCCCAGGACTACCGGCACCAAAAAGAGGTTCTAAATATTAAGAACCTTTCAAGTTCGGCATCAATCACAAGCTCAGCTGGTCACTTGCACTCAGACCATAACCTTTCAGTTAAAGGATCTTCATAAATGGGACTAATTTTGTAGCAGAAGGCCCCAGGCCCATGGTCAGTTTCAGATACAACACTCTAAAAGAGCCTTGTGAACCATTGTAACAGATGTGGTTCTCACACCCTGTGCTGGAGTGACAGTGTCTGCAGGTTTCATTTCCTCAGAGCACTAAATTTCTTCCCAGGGAAAATTGTACTTCAGTTTATAATTCAGGTGTTAATTGATAGGTGGATTGTGTAAATTAGTATccatttaaacagaaaacacaatgacaatATTTTTGTCTACGCATTTTacttataaaaaatacaaaatttagAAAGTTTCCATAGGaacacaatgtaaatgtaatccCATCTCTTTCAcatccatttttaaaaacataaactggCTTCTCaacattaaaagttaaaaataaaaaaaggcaagtTTTGTATGCAAGGGCCCTAGAAGCGATTTCTGCATGGAAGACAAGatcagtgtatttaaataagtaGCAGCCATACTCCTTTCCAGAAAAACTTGCTCTACAACATCCTAAGGCTGTGCTACACATGCCCAAGAGTCACCACCTATTCATCATCTGCAGAAAGGTGCACCCCCCTCCCACAGACTCCCCCACCCACCACCTCCTGCAACCAGTGAATCGTGgaagaaagtaaaaataaattaatctcaaAGCATGCACTCTAGTTTGAGTCACCTTTATCCTCTATGGCGCCCCAAGGAAGTCCCACAGAAGACAAGTTTTAACTTCCAGGAATTAATCTGATCTTTCATACAGAAAGCACAGTATTGCATACAGTTTGCCATCAACCCGACTGGTCCCTAATGCCACCCCAGGTAAGCCGACGCTGCAGCGCTCCAATGCTGGTGCTGGTTAGAGCACGCGAGTGGAGCAGGAGGACGCAGGCAGCTCCACCCCACTCTCCCAGGCACAGCAGGAGGGCAGAGTGCTGGGGCACAGCTCCCCCAAAGGCAGAGTCAAGCCCTGCTCCCGGACCTGCTGCATCAGTTGCCTGGAGACAAAAATAACGGGAAAGTTAAGGGAGAAGATGCCGTGCCACCTGCACATTCCAGTCAGTGGTAGTGAATGCCAGGGTCTTATCCTTTAACCCTGGGACTACATCCAAAACATGCCACACTGGACAAAAATAGTCACAAATCTAGCAGGCATCTGTGTGCAAATTTATACACATCAAGCCGTGATCCGAAGTTAAAATTTTCTTCACTGCAACACTGAACAAGTTAGTGTTCATAGAGATTACCCTGGTAATTGTGTACATGTTCAAAGCTACAGATCAGTGGTTACAGCAGGCAAGCCAGCTTGGTTGAAGGAGTTACAATAGACCAAGACTCACCATGCAGGCCTGGACATCACATAGTGGATGTCTGGTTTCTGGAAGCCATTGAAGGTGGAAGAAGCTGCCACAGTGTAGGCACCCATGTTCTCAAACAGCATCCAGTCCCCAACCTGCAGCTCTGGCATGTCACACAGCTCCACAATGCGGTCCAGGCCATCGCAGGTCGGGCCCCAGATGCTGCAGGAGTAGAACTTCTCATCTGGCTTGGGTTTCTTGTGCAGCATGGGCAGGACATGAGCATGGTCATAAAGGATGCAGTTGAAGGAGCCATAAACTCCATCGTTGACGTAATACATCAGGGTCCTGTCATTTGTGCCATCGTCTTCATCATCAGAGGCAGACTGTTCCTTCATCACCACCTTCTTAGCAATTATGTTGACCGCCAGGGTGTAGGCCGACGCCACATAGTAGCGCCCCGGCTCTGCGATCACCTGCACGCCAGAGTCCACTGGGAAGTACTTGTCCAGGGCAAGGTTGATCACAGCAGTGATCTCTTCAAACTTCAGCTTCACATCCTCTGACCCGGGGAACCCCCCACCGATGTCCAGGAGTGTCATGTTGAACCCGAGTTCCTCCCCCATATCAAAGACACAGCGAGCATCAGAAATGGCCTGGGAGTACGTCTCAGGGTCAGTGCAGCCACTCCCAACATGGAAGCTCACACCAATGATGTCCACCCCCAGCTCCTTCGCCCTCTCCAGCAGCAACCGGGAAGACTTCAGCGTCGCTCCAAACTTCACACTCAGACGGCACACGGCTTTGGAGTCATCGGTTGCAATCCGGAGAACGACTTTGCATTGCTATGGCTGCGTGCCACTTTCATCAGTTCCACCTCGCTGTCAAAGGTCATTTTCTGGACACCGTGGGCCGCTGCATATTTGATCTGGGACACCTGTTTGCAGGGGTTGGCATAGATGATGCGTTCTGGGGCGACGCCAATGCTCTGCACCAGCTGAATCTCATTCTGTGGGGAGAAAGTGAAGTCGTCAGTGATGTTTACTGGAGGATCCCCTTTACTGGGATCAGTCACTGGAGCAAACTGCTCATCTTTCAAAACCAACTCCACTAACTAAAAAAGACTGACCCATCCAATTTACAGGCCAGAACTGGAGAACATTTTGATTAACCCCCTCCCAAAAACACTGCCAGTACCACAGCAGGAACTGGCAATGTGCGATTAAGCAGGCGTCTGAGCTCTGCTGTTGCAGTTCCAGTCTGGGGCCACAGTATTGCCACACATACCTTGCTGGCACAGTCGAAGCCGGCTCCCAGGGTGGCGAGGGTGCGGACGACGGTCTTGCTGTCATTGCACTTGACGGCGTAGAAGGGGGTGATGCGTGGCAGGGCTCGGGCCCAGCGCAGGTGCTTCTTCAAGATGTCCCCCAGGTCTGCCACATAAAAGGCATCCTTGTCAT

Function

symbol description
odc1 Predicted to enable ornithine decarboxylase activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be active in cytoplasm. Is expressed in neuromast and ovary. Orthologous to several human genes including ODC1 (ornithine decarboxylase 1).

NR:

description
PREDICTED: ornithine decarboxylase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3865 True 3713 lncRNA 0.58 7 17935840 17940712

Neighbor

gene id symbol gene type direction distance location
AMCG00003776 NA coding downstream 38925 17889983 ~ 17896915 (-)
AMCG00003770 LOC107585532,LOC107675519 coding downstream 59254 17875147 ~ 17876586 (-)
AMCG00003768 NA coding downstream 144783 17789939 ~ 17791057 (-)
AMCG00003764 NA coding downstream 151250 17779479 ~ 17784590 (-)
AMCG00003765 NA coding downstream 232614 17680446 ~ 17703226 (-)
AMCG00003777 NA coding upstream 30100 17970812 ~ 18000814 (-)
AMCG00003778 LOC107594834 coding upstream 63459 18004171 ~ 18027626 (-)
AMCG00003780 NA coding upstream 164376 18105088 ~ 18124295 (-)
AMCG00003781 LOC103364986,LOC107735240 coding upstream 216146 18156858 ~ 18161968 (-)
AMCG00003783 NA coding upstream 222914 18163626 ~ 18175704 (-)
G2972 NA non-coding downstream 676297 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 681075 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 893291 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 938236 16996790 ~ 16997604 (-)
G2834 NA non-coding downstream 1347547 16588069 ~ 16588293 (-)
G3257 NA non-coding upstream 469158 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 498389 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 604641 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 934870 18875582 ~ 18878573 (-)
G3374 NA non-coding upstream 1009060 18949772 ~ 18950252 (-)
AMCG00003751 NA other downstream 795458 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 1064365 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 1307439 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 2344110 15515673 ~ 15591730 (-)
G2500 NA other downstream 3124509 14810786 ~ 14811331 (-)
G3181 NA other upstream 1865 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 194667 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 205948 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 1421106 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1484251 19424963 ~ 19425366 (-)

Expression


Co-expression Network