G3257


Basic Information

Item Value
gene id G3257
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18409870 ~ 18418066 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3968
aaatgtaaaaaatgtccctttgcattacaaatgtttctgtttaagGGTACGAAAAGAAAATACGAATTAATTCTATACAAGACAATGATACCAATACAAAAAAGCTTGATCATAAGATTTTTTGTGATAAACTCACACCTAAAACacagatcaaaataaatatggttCATGTTGTGGAGTCCAAATAGAATTCCAGTTTCTTGCAACTCATTCAGCCtttaatgttttcagtgctTCTATCCATGTTGTATCCGTGTCTACATTCAGTTCAGGCACTGCCAGGCTGCTCAGTCTTGATTCCTTTAGCATCTGTCTTTTCAGAGCCACTTTCCTTAGATTTATCTTCctcttttatttctgctttcttttcctctgcttctttcttttcttcctccaCTCTGGCTCGTTTAGCATTTTTCTTGTGATTTGCGACATTCCTCCTCCCACCCTCTCCTTCATCTTCAGAGTCAGAAAACTCCTCATCACAGGCGATCCTTTTGTCAGATGCCCGaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3968 True 513 lncRNA 0.38 3 18409870 18418066

Neighbor

gene id symbol gene type direction distance location
AMCG00003794 hs3st5 coding downstream 25118 18321860 ~ 18384752 (-)
AMCG00003792 NA coding downstream 122718 18280123 ~ 18287152 (-)
AMCG00003793 NA coding downstream 134413 18248055 ~ 18275457 (-)
AMCG00003791 eva1a,LOC107593306,LOC107719434 coding downstream 182948 18222745 ~ 18226922 (-)
AMCG00003788 H3F3A,h3f3b,LOC105909691,LOC102696298,LOC107388308,LOC101073377,LOC107572204 coding downstream 189132 18215786 ~ 18220738 (-)
AMCG00003796 marcks coding upstream 17221 18435287 ~ 18437960 (-)
AMCG00003801 NA coding upstream 265316 18683382 ~ 18690727 (-)
AMCG00003810 NA coding upstream 365582 18783648 ~ 18785327 (-)
AMCG00003806 NA coding upstream 461469 18879535 ~ 18889212 (-)
AMCG00003807 NA coding upstream 474698 18892764 ~ 18912514 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding downstream 469158 17935840 ~ 17940712 (-)
G2972 NA non-coding downstream 1150327 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 1155105 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 1367321 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 1412266 16996790 ~ 16997604 (-)
G3266 NA non-coding upstream 21035 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 127287 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 457516 18875582 ~ 18878573 (-)
G3374 NA non-coding upstream 531706 18949772 ~ 18950252 (-)
G3395 NA non-coding upstream 627741 19045807 ~ 19046205 (-)
AMCG00003782 ctsb other downstream 257489 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 267189 18135379 ~ 18142681 (-)
G3181 NA other downstream 464928 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 1269488 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 1538395 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 943752 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1006897 19424963 ~ 19425366 (-)
G3523 NA other upstream 1025950 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 5111453 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 5322519 23740585 ~ 23757796 (-)

Expression


Co-expression Network