Gene
RNA
| Item | Value |
|---|---|
| gene id | G3265 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 18438806 ~ 18439666 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0072175 | epithelial tube formation | biological_process |
| GO:0001838 | embryonic epithelial tube formation | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0035148 | tube formation | biological_process |
| GO:0016331 | morphogenesis of embryonic epithelium | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU3977 | True | 861 | lncRNA | 0.39 | 1 | 18438806 | 18439666 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003795 | hdac2 | coding | upstream | 19306 | 18398255 ~ 18419500 (+) |
| AMCG00003797 | NA | coding | upstream | 89440 | 18348135 ~ 18349366 (+) |
| AMCG00003798 | NA | coding | upstream | 90675 | 18347891 ~ 18348131 (+) |
| AMCG00003790 | NA | coding | upstream | 118543 | 18288900 ~ 18320263 (+) |
| AMCG00003785 | mrpl19 | coding | upstream | 158977 | 18276458 ~ 18279829 (+) |
| AMCG00003800 | NA | coding | downstream | 183213 | 18622879 ~ 18668138 (+) |
| AMCG00003799 | tube1 | coding | downstream | 231058 | 18670724 ~ 18682733 (+) |
| AMCG00003804 | fyn,LOC103458010,LOC106529781 | coding | downstream | 261977 | 18701643 ~ 18779760 (+) |
| AMCG00003803 | NA | coding | downstream | 344745 | 18784411 ~ 18799944 (+) |
| AMCG00003805 | NA | coding | downstream | 367656 | 18807322 ~ 18808608 (+) |
| G2967 | NA | non-coding | upstream | 1182356 | 17254266 ~ 17256450 (+) |
| G2945 | LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 | non-coding | upstream | 1228765 | 17208035 ~ 17210041 (+) |
| G2861 | NA | non-coding | upstream | 1504786 | 16868299 ~ 16934020 (+) |
| G2836 | NA | non-coding | upstream | 1839477 | 16599058 ~ 16599329 (+) |
| G2833 | NA | non-coding | upstream | 1841437 | 16593264 ~ 16597369 (+) |
| G3269 | NA | non-coding | downstream | 105318 | 18544984 ~ 18545538 (+) |
| G3370 | NA | non-coding | downstream | 505916 | 18945582 ~ 18946131 (+) |
| G3373 | NA | non-coding | downstream | 510088 | 18949754 ~ 18950254 (+) |
| G3375 | NA | non-coding | downstream | 511586 | 18951252 ~ 18971124 (+) |
| G3391 | NA | non-coding | downstream | 645305 | 19084971 ~ 19086715 (+) |
| G3108 | NA | other | upstream | 286492 | 18146660 ~ 18152314 (+) |
| AMCG00003779 | ctsb,catb,LOC107381178 | other | upstream | 296173 | 18131919 ~ 18142633 (+) |
| G3047 | NA | other | upstream | 754818 | 17681817 ~ 17683988 (+) |
| AMCG00003744 | NA | other | upstream | 1396212 | 17032570 ~ 17042594 (+) |
| AMCG00003712 | extl3,LOC106571659,LOC106608199 | other | upstream | 2399166 | 16024871 ~ 16039640 (+) |
| AMCG00003828 | ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 | other | downstream | 832299 | 19271965 ~ 19397686 (+) |
| G3751 | NA | other | downstream | 3109535 | 21549201 ~ 21549533 (+) |
| G3771 | NA | other | downstream | 3306184 | 21745850 ~ 21760630 (+) |
| AMCG00003853 | NA | other | downstream | 3450857 | 21890523 ~ 21901865 (+) |
| G3799 | med23 | other | downstream | 3482970 | 21922636 ~ 21923787 (+) |
