G3269


Basic Information

Item Value
gene id G3269
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18544984 ~ 18545538 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3983
cttcaagtaactatggtggaaccctgcttgccaagaagattttgtgcacaaccttggagccttcaaaccagtggaaaatctgtttggaaaagactctactttcgcgaaaccccaacttccaggtgcatcgactgagtggaagttcttggacaaagccgaaccggactgcctttgttccaaaccacacggacctcgtgccgtgtgttgttatctgagcccgaagccagagaggcctctctgcgacgaagttcagataagtttaacagtttggagttcatgattcatgacatttgagaaatcaattagaaatgtgtgtgtgattcataactctagaatgtgttaatcatttagttttcttaaatataaatgtgtgttgcattaaactgttttgttgataattttagaaataaaatctgtcaactccgagaaatatcttctcattcctgtttaactgtttagtctgaaattgacacaagttaatagacattagattattggtggccctgcctatccttaatcattgaataataatcagttaagggaaattgtggtatc

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis

RNA

RNA id representative length rna type GC content exon number start site end site
TU3983 True 555 lncRNA 0.44 1 18544984 18545538

Neighbor

gene id symbol gene type direction distance location
AMCG00003795 hdac2 coding upstream 125484 18398255 ~ 18419500 (+)
AMCG00003797 NA coding upstream 195618 18348135 ~ 18349366 (+)
AMCG00003798 NA coding upstream 196853 18347891 ~ 18348131 (+)
AMCG00003790 NA coding upstream 224721 18288900 ~ 18320263 (+)
AMCG00003785 mrpl19 coding upstream 265155 18276458 ~ 18279829 (+)
AMCG00003800 NA coding downstream 77341 18622879 ~ 18668138 (+)
AMCG00003799 tube1 coding downstream 125186 18670724 ~ 18682733 (+)
AMCG00003804 fyn,LOC103458010,LOC106529781 coding downstream 156105 18701643 ~ 18779760 (+)
AMCG00003803 NA coding downstream 238873 18784411 ~ 18799944 (+)
AMCG00003805 NA coding downstream 261784 18807322 ~ 18808608 (+)
G3265 NA non-coding upstream 105318 18438806 ~ 18439666 (+)
G2967 NA non-coding upstream 1288534 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 1334943 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 1610964 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 1945655 16599058 ~ 16599329 (+)
G3370 NA non-coding downstream 400044 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 404216 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 405714 18951252 ~ 18971124 (+)
G3391 NA non-coding downstream 539433 19084971 ~ 19086715 (+)
G3496 NA non-coding downstream 879469 19425007 ~ 19425344 (+)
G3108 NA other upstream 392670 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 402351 18131919 ~ 18142633 (+)
G3047 NA other upstream 860996 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 1502390 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 2505344 16024871 ~ 16039640 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 726427 19271965 ~ 19397686 (+)
G3751 NA other downstream 3003663 21549201 ~ 21549533 (+)
G3771 NA other downstream 3200312 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 3344985 21890523 ~ 21901865 (+)
G3799 med23 other downstream 3377098 21922636 ~ 21923787 (+)

Expression


Co-expression Network