G3373


Basic Information

Item Value
gene id G3373
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18949754 ~ 18950254 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4095
CTCGgcaaaaaagaaacgtcctctcttttattttcagcaaacttaacatgtaaatatttgtatgcacataaaaatattcaacaactaagacataaactgaacaagtttcacagacatgtgactaacagaaatggaataatgtgtccgtGAACAAAGGGACAGTCAGTATCTGtgctgcagtgcatctcctcctcctggactgcaccagatgtgccagttcttgctgtgagatgttaccccactcttccaccaaggcacttgcaagttcccggacatttctgggggaatggccctagccctcaccctccgatccaacaggtcccagacgtgctcaatgggattgagatccacGCTCTTCAATGGCAGAACACCGACATTCCTGTcctgcaggaaatcacgtccagtgaaggtgggtttgtgcccataggtgACGTTGTTCCTGGAGATGTCTGGtgaggacctgccttacaacaggcctacaagccctcagtccagcctNNN

Function

NR:

description
PREDICTED: uncharacterized protein LOC103359075

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4095 True 501 lncRNA 0.41 1 18949754 18950254

Neighbor

gene id symbol gene type direction distance location
AMCG00003802 rev3l,LOC107569208,LOC104962055,LOC107705450 coding upstream 71219 18832112 ~ 18878535 (+)
AMCG00003805 NA coding upstream 141146 18807322 ~ 18808608 (+)
AMCG00003803 NA coding upstream 149810 18784411 ~ 18799944 (+)
AMCG00003804 fyn,LOC103458010,LOC106529781 coding upstream 169994 18701643 ~ 18779760 (+)
AMCG00003799 tube1 coding upstream 267021 18670724 ~ 18682733 (+)
AMCG00003813 cdk19,LOC103371529 coding downstream 52802 19003056 ~ 19003858 (+)
AMCG00003814 cdk19 coding downstream 66751 19017005 ~ 19031747 (+)
AMCG00003812 tab2 coding downstream 123538 19073792 ~ 19084953 (+)
AMCG00003816 NA coding downstream 182729 19132983 ~ 19138200 (+)
AMCG00003815 pcmt1 coding downstream 218512 19168766 ~ 19180512 (+)
G3370 NA non-coding upstream 3623 18945582 ~ 18946131 (+)
G3269 NA non-coding upstream 404216 18544984 ~ 18545538 (+)
G3265 NA non-coding upstream 510088 18438806 ~ 18439666 (+)
G2967 NA non-coding upstream 1693304 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 1739713 17208035 ~ 17210041 (+)
G3375 NA non-coding downstream 998 18951252 ~ 18971124 (+)
G3391 NA non-coding downstream 134717 19084971 ~ 19086715 (+)
G3496 NA non-coding downstream 474753 19425007 ~ 19425344 (+)
G3534 NA non-coding downstream 762549 19712803 ~ 19713057 (+)
G3536 NA non-coding downstream 775073 19725327 ~ 19725709 (+)
G3108 NA other upstream 797440 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 807121 18131919 ~ 18142633 (+)
G3047 NA other upstream 1265766 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 1907160 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 2910114 16024871 ~ 16039640 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 321711 19271965 ~ 19397686 (+)
G3751 NA other downstream 2598947 21549201 ~ 21549533 (+)
G3771 NA other downstream 2795596 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 2940269 21890523 ~ 21901865 (+)
G3799 med23 other downstream 2972382 21922636 ~ 21923787 (+)

Expression


Co-expression Network