G3405


Basic Information

Item Value
gene id G3405
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19084704 ~ 19086692 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4135
ACAAAGACAGTTTTCCCagctaaaaccaaaaaaaaaaaaaaaaagtagatatccaaattagatttttattaataaaacgTACTGTATTAACTGACTCAATCTTCACACAGAACTGCAGATGAAGCTGAAAACTGAGTTGCTCttgattaaaaaattaaagtCTGATGTATATGCTCTGGGATTTCGGTACCAAATTTATTTCCATGATTTAGAAATTAAgtacttgattaaaaaaaaaaaaaacttgcatagATTGATAGAACAACCATTAAAAAATGTGCAGCAGCCCTACACAACATGTGACAAACTTTACAAATTCCTTAAAAACTATTtcacaaatgtaaagaaatgaACTGGTaaacttatgttttttttttaaaaacataattatcaaACCAATACCAAAGTAAACgatttaggggaaaaaaatgtgggATTTCAATTGAAAAAAGTGTTTCATCACTGCTGATCCTGCGGTTTAATTCTCAGAAGTCAGgcatgatgaaaatgaaaaaaaaagttaagaatATTCGGGGAACTAAAAagggtattgtttgtatatatacagatctATTGACACTGTTTTCAATCTCCAATCTGAAAGTCCTTACAAAGGTAGCCTTCAAATTAGGTTTCGTGTGGACTGCACTGACAACCCCATCGTTCATTCTCAACACCAGACCATCATCCTGCCTGAATGAGTCACTTTATACAAAGTATTCATGAAACAATTTTAAGTCCCTCTTTTAGCCTCAAACTTTAAAAACCCCCGAAACATTTACAACCACAAGTTGTAAGATAAGTTGGCCGTTTGTCATCTGCTGTGAGCTTCAGTCTTGATTTGTAAAATCTCAGATTCAATCCGAATTAAAATCTCCATCTTGCGTCTTAGCTGCATCTGCAGGTCATACGTGGAATATCAACATTTACAGGAGCAATGAACAGACTGAGCAGAGAAAGCTCGTGCATAGATTCAtatttttgctcttttttttttatttaaggctTCACTTCTCACAGATAAAGTAAAAAGCTTAAAGGGACATCGTGCTTATTtgctttaaaggaaaaaaacagttaaTCAAGACTATTACACTATACTTACAGGAAATACAAGAAACTCTTAGCgtgaagaaaaaagtaatttaaagcaGATTCTAAAACTATGTACAGTAAGAGAAGCTTGGGGGTATTTTTCACTGTGTACTGTACATACAAAGCATGCAGTTTCACTTCCATTGTGTTGTACTGTGGATTGTAGAGACGCAGAGTGGAGGCAATCAAGGAGAGGGACGCGGTGAGTATCAGTGCCAGTAACACTGTTTTCTTCCCAATATCCTTTGAAAAAACAGCAACCAATTAGATGGTCCAGACTAGCttcttaatgtttattttttcccttcaaaTGTAGTGTGACAGTGGATTTTTCCCCTCTTTGAACCACTGAAAGACGTGTCCCCAGTATCACAGAAAAGAGGGCAAAGTGAATCGTAGCACCCTGCCCTGACCATTACACTGAAGGGAAGCACTGATAATACTGCACATGGAAGAAGAGGCCTCTCGTGAAAAGTTTAtgacatttactttaaaaattgaACAGGTTCCCCGAAGTGCCGTTGTCCCAAAGGTGAGGTATTATCAGCTCTATTCGTTATTAAGTACACAACCTGTAAACACTATCCAGTCAAGCCTTCAGCGGACAGCATCCTACATAAAAGATGTGAAACAatgaatgaagaagaaaaaaaaaaaaaaaaaaaaaaacctggccAGATCATCttattcatgaaaaaaaaaaaaacaccttttctaATCTAGTTTTAAATTctcataaaaaaaggaaaagaagaaagggTACGGGTGCCTGGTGGCTCAGAAGTGCCTGGGAAATTCACACTGTTCACAGCGGTTAAGGGCCGGGTGGTTTAGGAAGGTGCAGGCTGTGCAGCTCCACTGGGCCCCCTCATCCTCCTCCGTGTCTGCTACAGT
>TU4138
ACAAAGACAGTTTTCCCagctaaaaccaaaaaaaaaaaaaaaaagtagatatccaaattagatttttattaataaaacgTACTGTATTAACTGACTCAATCTTCACACAGAACTGCAGATGAAGCTGAAAACTGAGTTGCTCttgattaaaaaattaaagtCTGATGTATATGCTCTGGGATTTCGGTACCAAATTTATTTCCATGATTTAGAAATTAAgtacttgattaaaaaaaaaaaaaacttgcatagATTGATAGAACAACCATTAAAAAATGTGCAGCAGCCCTACACAACATGTGACAAACTTTACAAATTCCTTAAAAACTATTtcacaaatgtaaagaaatgaACTGGTaaacttatgttttttttttaaaaacataattatcaaACCAATACCAAAGTAAACgatttaggggaaaaaaatgtgggATTTCAATTGAAAAAAGTGTTTCATCACTGCTGATCCTGCGGTTTAATTCTCAGAAGTCAGgcatgatgaaaatgaaaaaaaaagttaagaatATTCGGGGAACTAAAAagggtattgtttgtatatatacagatctATTGACACTGTTTTCAATCTCCAATCTGAAAGTCCTTACAAAGGTAGCCTTCAAATTAGGTTTCGTGTGGACTGCACTGACAACCCCATCGTTCATTCTCAACACCAGACCATCATCCTGCCTGAATGAGTCACTTTATACAAAGTATTCATGAAACAATTTTAAGTCCCTCTTTTAGCCTCAAACTTTAAAAACCCCCGAAACATTTACAACCACAAGTTGTAAGATAAGTTGGCCGTTTGTCATCTGCTGTGAGCTTCAGTCTTGATTTGTAAAATCTCAGATTCAATCCGAATTAAAATCTCCATCTTGCGTCTTAGCTGCATCTGCAGGTCATACGTGGAATATCAACATTTACAGGAGCAATGAACAGACTGAGCAGAGAAAGCTCGTGCATAGATTCAtatttttgctcttttttttttatttaaggctTCACTTCTCACAGATAAAGTAAAAAGCTTAAAGGGACATCGTGCTTATTtgctttaaaggaaaaaaacagttaaTCAAGACTATTACACTATACTTACAGGAAATACAAGAAACTCTTAGCgtgaagaaaaaagtaatttaaagcaGATTCTAAAACTATGTACAGTAAGAGAAGCTTGGGGGTATTTTTCACTGTGTACTGTACATACAAAGCATGCAGTTTCACTTCCATTGTGTTGTACTGTGGATTGTAGAGACGCAGAGTGGAGGCAATCAAGGAGAGGGACGCGGTGAGTATCAGTGCCAGTAACACTGTTTTCTTCCCAATATCCTTTGAAAAAACAGCAACCAATTAGATGGTCCAGACTAGCttcttaatgtttattttttcccttcaaaTGTAGTGTGACAGTGGATTTTTCCCCTCTTTGAACCACTGAAAGACGTGTCCCCAGTATCACAGAAAAGAGGGCAAAGTGAATCGTAGCACCCTGCCCTGACCATTACACTGAAGGGAAGCACTGATAATACTGCACATGGAAGAAGAGGCCTCTCGTGAAAAGTTTAtgacatttactttaaaaattgaACAGGTTCCCCGAAGTGCCGTTGTCCCAAAGGTGAGGTATTATCAGCTCTATTCGTTATTAAGTACACAACCTGTAAACACTATCCAGTCAAGCCTTCAGCGGACAGCATCCTACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4135 True 1989 lncRNA 0.37 1 19084704 19086692
TU4138 False 1713 lncRNA 0.36 1 19084980 19086692

Neighbor

gene id symbol gene type direction distance location
AMCG00003808 amd1,dcam coding downstream 113609 18951252 ~ 18971095 (-)
AMCG00003809 rpf2,LOC102791246 coding downstream 136044 18944095 ~ 18948660 (-)
AMCG00003811 NA coding downstream 146740 18931764 ~ 18937964 (-)
AMCG00003807 NA coding downstream 172190 18892764 ~ 18912514 (-)
AMCG00003806 NA coding downstream 195492 18879535 ~ 18889212 (-)
AMCG00003817 NA coding upstream 2506 19089198 ~ 19098312 (-)
AMCG00003819 ppil4 coding upstream 33123 19119815 ~ 19131852 (-)
AMCG00003820 katna1 coding upstream 56227 19142919 ~ 19150162 (-)
AMCG00003818 lats1,LOC107742997 coding upstream 65924 19152616 ~ 19169651 (-)
AMCG00003821 NA coding upstream 93987 19180679 ~ 19196676 (-)
G3403 NA non-coding downstream 5039 19079434 ~ 19079665 (-)
G3402 NA non-coding downstream 6840 19077456 ~ 19077864 (-)
G3395 NA non-coding downstream 38499 19045807 ~ 19046205 (-)
G3374 NA non-coding downstream 134452 18949772 ~ 18950252 (-)
G3354 NA non-coding downstream 206131 18875582 ~ 18878573 (-)
G3470 pcmt1,LOC107554157 non-coding upstream 88880 19175572 ~ 19180511 (-)
G3482 NA non-coding upstream 269953 19356645 ~ 19357239 (-)
G3535 NA non-coding upstream 626143 19712835 ~ 19713052 (-)
G3552 NA non-coding upstream 813277 19899969 ~ 19900381 (-)
G3553 NA non-coding upstream 815390 19902082 ~ 19903092 (-)
AMCG00003782 ctsb other downstream 932323 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 942023 18135379 ~ 18142681 (-)
G3181 NA other downstream 1139762 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 1944322 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 2213229 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 275126 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 338271 19424963 ~ 19425366 (-)
G3523 NA other upstream 357324 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 4442827 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 4653893 23740585 ~ 23757796 (-)

Expression


Co-expression Network