G3523


Basic Information

Item Value
gene id G3523
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19444016 ~ 19506753 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4274
taatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtgccaattgggcatcgtttaaatgccacggcctacctgaccattgtttctgaccatgtccaccatgtacccatcctctgatggctacatccagcaggataatgcaccgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatac
>TU4275
TGGATCCATCATGCCTTGTTACCACTGTGCAGGCtgctggtggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtgccaattgggcatcgtttaaatgccacggcctacctgaccattgtttctgaccatgtccaccatgtacccatcctctgatggctacatccagcaggataatgcaccgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatac
>TU4276
TGGATCCATCATGCCTTGTTACCACTGTGCAGGCtgttggtggtggtgtaattgtgtgggggatgttttcttggccccttagtgccaattgggcatcgtttaaatgccacggcctacctgaccattgtttctgaccatgtccaccatgtacccatcctctgatggctacatccagcaggataatgcaccgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4274 True 681 TUCP 0.43 2 19444016 19444743
TU4275 False 537 lncRNA 0.33 2 19444016 19506753
TU4276 False 523 TUCP 0.46 2 19444016 19506753

Neighbor

gene id symbol gene type direction distance location
AMCG00003824 NA coding downstream 53297 19388365 ~ 19390719 (-)
AMCG00003823 ctgf,LOC106571301,LOC107683930,LOC107737382 coding downstream 156833 19283996 ~ 19287183 (-)
AMCG00003822 map3k5 coding downstream 203421 19201663 ~ 19240595 (-)
AMCG00003821 NA coding downstream 247340 19180679 ~ 19196676 (-)
AMCG00003818 lats1,LOC107742997 coding downstream 274365 19152616 ~ 19169651 (-)
AMCG00003830 NA coding upstream 115856 19622609 ~ 19624841 (-)
AMCG00003831 NA coding upstream 170376 19677129 ~ 19677768 (-)
AMCG00003834 LOC101882414,LOC101885221,LOC107674786,LOC107572727 coding upstream 282640 19789393 ~ 19789825 (-)
AMCG00003837 NA coding upstream 570362 20077115 ~ 20078155 (-)
AMCG00003838 NA coding upstream 997346 20504099 ~ 20512976 (-)
G3482 NA non-coding downstream 86777 19356645 ~ 19357239 (-)
G3470 pcmt1,LOC107554157 non-coding downstream 263505 19175572 ~ 19180511 (-)
G3405 NA non-coding downstream 357324 19084704 ~ 19086692 (-)
G3403 NA non-coding downstream 364351 19079434 ~ 19079665 (-)
G3402 NA non-coding downstream 366152 19077456 ~ 19077864 (-)
G3535 NA non-coding upstream 206082 19712835 ~ 19713052 (-)
G3552 NA non-coding upstream 393216 19899969 ~ 19900381 (-)
G3553 NA non-coding upstream 395329 19902082 ~ 19903092 (-)
G3554 NA non-coding upstream 401277 19908030 ~ 19908341 (-)
G3584 NA non-coding upstream 522110 20028863 ~ 20416071 (-)
G3517 LOC101154678 other downstream 18650 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 70791 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 1291635 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 1301335 18135379 ~ 18142681 (-)
G3181 NA other downstream 1499074 17942577 ~ 17944942 (-)
AMCG00003893 NA other upstream 4022766 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 4233832 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 4757154 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 6391181 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 6458667 25965420 ~ 25998628 (-)

Expression


Co-expression Network