G3550


Basic Information

Item Value
gene id G3550
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19898266 ~ 19898543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4303
CACTCGGGCTGCAGTGAAACGCAGGATGTTAAGGACGAGCGACACAGAGCCGAGTTCAATACATGAAAGTACGAGAAGACAAAGTCAttcagaaaacacagacagctCTGATGATCCTCAAGTCAGTAATGAGCCTCAGACAACTAAGCGTCTGACTGCTCTGGAACTGAGAGTTTTCAAAGATGATTTGGGTCCAATTACTCTAGAGACAGATTCAGAGGAATTAATAATTCGACTTTTATCTTGCATTCAGTTACACCCACAACTGAACGACCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4303 True 278 lncRNA 0.44 1 19898266 19898543

Neighbor

gene id symbol gene type direction distance location
AMCG00003827 NA coding upstream 266819 19630470 ~ 19631447 (+)
AMCG00003826 NA coding upstream 447993 19448872 ~ 19450273 (+)
AMCG00003815 pcmt1 coding upstream 717754 19168766 ~ 19180512 (+)
AMCG00003816 NA coding upstream 760066 19132983 ~ 19138200 (+)
AMCG00003812 tab2 coding upstream 813313 19073792 ~ 19084953 (+)
AMCG00003832 NA coding downstream 34631 19933174 ~ 19943837 (+)
AMCG00003833 NA coding downstream 45467 19944010 ~ 19945017 (+)
AMCG00003835 NA coding downstream 234230 20132773 ~ 20133355 (+)
AMCG00003836 NA coding downstream 434580 20333123 ~ 20333536 (+)
AMCG00003844 lama2,LOC107653134 coding downstream 1389917 21288460 ~ 21296218 (+)
G3549 NA non-coding upstream 356 19897585 ~ 19897910 (+)
G3548 NA non-coding upstream 731 19897110 ~ 19897535 (+)
G3536 NA non-coding upstream 172557 19725327 ~ 19725709 (+)
G3534 NA non-coding upstream 185209 19712803 ~ 19713057 (+)
G3496 NA non-coding upstream 472922 19425007 ~ 19425344 (+)
G3562 NA non-coding downstream 195495 20094038 ~ 20240154 (+)
G3563 NA non-coding downstream 341111 20239654 ~ 20259023 (+)
G3582 NA non-coding downstream 492647 20391190 ~ 20419930 (+)
G3620 NA non-coding downstream 689548 20588091 ~ 20588564 (+)
G3635 NA non-coding downstream 878516 20777059 ~ 20801146 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 500580 19271965 ~ 19397686 (+)
G3108 NA other upstream 1745952 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 1755633 18131919 ~ 18142633 (+)
G3047 NA other upstream 2214278 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 2855672 17032570 ~ 17042594 (+)
G3751 NA other downstream 1650658 21549201 ~ 21549533 (+)
G3771 NA other downstream 1847307 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 1991980 21890523 ~ 21901865 (+)
G3799 med23 other downstream 2024093 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 2784473 22683016 ~ 22769227 (+)

Expression


Co-expression Network