G3563


Basic Information

Item Value
gene id G3563
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20239654 ~ 20259023 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4316
AGTGACTACTGGATTGAAAGAATTGTGCTGTTTGGAtgtgtgactgaaatgtgaaatgatatgtgatgtttcaatgtgatgtaagtggatacacactgaataatgctactatggtgtattgtattattgtatatgggaATTGAGTGAAAAACTAGTTCTAAAAAATCTATGTGAtaacaaagccaatgctttgaaatgaacgaataatacatatttgctctagttaaaaaaaaaaaaaaaaaaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4316 True 246 lncRNA 0.30 2 20239654 20259023

Neighbor

gene id symbol gene type direction distance location
AMCG00003835 NA coding upstream 106299 20132773 ~ 20133355 (+)
AMCG00003833 NA coding upstream 294637 19944010 ~ 19945017 (+)
AMCG00003832 NA coding upstream 295817 19933174 ~ 19943837 (+)
AMCG00003827 NA coding upstream 608207 19630470 ~ 19631447 (+)
AMCG00003826 NA coding upstream 789381 19448872 ~ 19450273 (+)
AMCG00003836 NA coding downstream 74100 20333123 ~ 20333536 (+)
AMCG00003844 lama2,LOC107653134 coding downstream 1029437 21288460 ~ 21296218 (+)
AMCG00003843 lama2 coding downstream 1055051 21314074 ~ 21333224 (+)
AMCG00003845 NA coding downstream 1089204 21348227 ~ 21438679 (+)
AMCG00003846 NA coding downstream 1181091 21440114 ~ 21447121 (+)
G3550 NA non-coding upstream 341111 19898266 ~ 19898543 (+)
G3549 NA non-coding upstream 341744 19897585 ~ 19897910 (+)
G3548 NA non-coding upstream 342119 19897110 ~ 19897535 (+)
G3536 NA non-coding upstream 513945 19725327 ~ 19725709 (+)
G3534 NA non-coding upstream 526597 19712803 ~ 19713057 (+)
G3582 NA non-coding downstream 132167 20391190 ~ 20419930 (+)
G3620 NA non-coding downstream 329068 20588091 ~ 20588564 (+)
G3635 NA non-coding downstream 518036 20777059 ~ 20801146 (+)
G3648 NA non-coding downstream 576714 20835737 ~ 20860294 (+)
G3661 NA non-coding downstream 644549 20903572 ~ 20908517 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 841968 19271965 ~ 19397686 (+)
G3108 NA other upstream 2087340 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 2097021 18131919 ~ 18142633 (+)
G3047 NA other upstream 2555666 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 3197060 17032570 ~ 17042594 (+)
G3751 NA other downstream 1290178 21549201 ~ 21549533 (+)
G3771 NA other downstream 1486827 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 1631500 21890523 ~ 21901865 (+)
G3799 med23 other downstream 1663613 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 2423993 22683016 ~ 22769227 (+)

Expression


Co-expression Network