G3582


Basic Information

Item Value
gene id G3582
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20391190 ~ 20419930 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4339
agaccatggaatcgcatatgataccacacaaatcgttaaacaaaaaaggttataaacacattgactacaataccagttagtaagacgaaggtgagtctctcattagtattgttagtcagacattaaataactacgcaggttagtatttatgtcaggtaacttctcgttatatatatatcagtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaactgattattattcaatgattaaggataggcagggccatcTATAATCTGgtgtctattaacttgtgtcaatttcagactaaacagttaaacaggaatgagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4339 True 345 lncRNA 0.34 2 20391190 20419930

Neighbor

gene id symbol gene type direction distance location
AMCG00003836 NA coding upstream 57654 20333123 ~ 20333536 (+)
AMCG00003835 NA coding upstream 257835 20132773 ~ 20133355 (+)
AMCG00003833 NA coding upstream 446173 19944010 ~ 19945017 (+)
AMCG00003832 NA coding upstream 447353 19933174 ~ 19943837 (+)
AMCG00003827 NA coding upstream 759743 19630470 ~ 19631447 (+)
AMCG00003844 lama2,LOC107653134 coding downstream 868530 21288460 ~ 21296218 (+)
AMCG00003843 lama2 coding downstream 894144 21314074 ~ 21333224 (+)
AMCG00003845 NA coding downstream 928297 21348227 ~ 21438679 (+)
AMCG00003846 NA coding downstream 1020184 21440114 ~ 21447121 (+)
AMCG00003847 NA coding downstream 1071954 21491884 ~ 21535758 (+)
G3563 NA non-coding upstream 132167 20239654 ~ 20259023 (+)
G3562 NA non-coding upstream 151036 20094038 ~ 20240154 (+)
G3550 NA non-coding upstream 492647 19898266 ~ 19898543 (+)
G3549 NA non-coding upstream 493280 19897585 ~ 19897910 (+)
G3548 NA non-coding upstream 493655 19897110 ~ 19897535 (+)
G3620 NA non-coding downstream 168161 20588091 ~ 20588564 (+)
G3635 NA non-coding downstream 357129 20777059 ~ 20801146 (+)
G3648 NA non-coding downstream 415807 20835737 ~ 20860294 (+)
G3661 NA non-coding downstream 483642 20903572 ~ 20908517 (+)
G3666 NA non-coding downstream 492212 20912142 ~ 20912988 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 993504 19271965 ~ 19397686 (+)
G3108 NA other upstream 2238876 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 2248557 18131919 ~ 18142633 (+)
G3047 NA other upstream 2707202 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 3348596 17032570 ~ 17042594 (+)
G3751 NA other downstream 1129271 21549201 ~ 21549533 (+)
G3771 NA other downstream 1325920 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 1470593 21890523 ~ 21901865 (+)
G3799 med23 other downstream 1502706 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 2263086 22683016 ~ 22769227 (+)

Expression


Co-expression Network