G3616 (LOC107575789)


Basic Information

Item Value
gene id G3616
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20576012 ~ 20576914 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4377
acacatctcaggagggattgtgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactagGCCAATGTGCCTCTTCTTGAGctactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacaacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcgtccctttgatgcggtgcagttgtactgtccccttagcagaaaaatacccccaaagcataatgtttccacctccatgtttcaTGGTGGGGATGCTGTTCCTGGGGTCATtcttcctcctccaaacacggcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcattggcaaacgtcagacgggcctgtacatgtgctttcttgagcagggggaccttgcggagtagtgtgttaccaattgttcttgtagcccattccagccttgtgtaggtctacaatcttgtccctaacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattaggagcactcttagggagtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaa

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4377 True 903 lncRNA 0.47 1 20576012 20576914

Neighbor

gene id symbol gene type direction distance location
AMCG00003838 NA coding downstream 63036 20504099 ~ 20512976 (-)
AMCG00003837 NA coding downstream 497857 20077115 ~ 20078155 (-)
AMCG00003834 LOC101882414,LOC101885221,LOC107674786,LOC107572727 coding downstream 786187 19789393 ~ 19789825 (-)
AMCG00003831 NA coding downstream 898244 19677129 ~ 19677768 (-)
AMCG00003830 NA coding downstream 951171 19622609 ~ 19624841 (-)
AMCG00003840 NA coding upstream 313218 20890132 ~ 20898701 (-)
AMCG00003842 LOC106607755,LOC106571353 coding upstream 331476 20908390 ~ 20920636 (-)
AMCG00003841 LOC108432850,LOC106607755 coding upstream 373521 20950435 ~ 20959586 (-)
AMCG00003839 LOC106607755 coding upstream 453165 21030079 ~ 21042693 (-)
AMCG00003848 NA coding upstream 659580 21236494 ~ 21238978 (-)
G3607 NA non-coding downstream 156013 20391183 ~ 20419999 (-)
G3584 NA non-coding downstream 159941 20028863 ~ 20416071 (-)
G3602 NA non-coding downstream 203069 20368005 ~ 20372943 (-)
G3587 NA non-coding downstream 336934 20238513 ~ 20239078 (-)
G3554 NA non-coding downstream 667671 19908030 ~ 19908341 (-)
G3617 NA non-coding upstream 2450 20579364 ~ 20579571 (-)
G3618 NA non-coding upstream 9606 20586520 ~ 20586750 (-)
G3626 NA non-coding upstream 18018 20594932 ~ 20598985 (-)
G3646 NA non-coding upstream 253918 20830832 ~ 20831099 (-)
G3655 NA non-coding upstream 254456 20831370 ~ 20882144 (-)
G3523 NA other downstream 1069259 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 1150646 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 1202787 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 2423631 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 2433331 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 2952605 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 3163671 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 3686993 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 5321020 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 5388506 25965420 ~ 25998628 (-)

Expression


Co-expression Network