G3620


Basic Information

Item Value
gene id G3620
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20588091 ~ 20588564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4381
cctccaaatctcgcagaaTCACGCGTGATCCACACAGCGAAAAGGTCAACAGACACGGACgtgcacatgtacaggtcacgtttgtgtagcgcagatctgcactgctccaccaatgggatcagaggatttctgcagatctgtgcaaaactgcggaaagaaggcgaccacaagccgctgctgctgtttgtgttcgtctgtgcagacaaacacaaaaagcgtatattattttaaaataacctgccccgaaacaaccattggtgtttgaagtattttaataaatacgtatgaaaatcttattctcctgtcatgtttattcttctgtttcttttctcttcttcagtcagctcgcctctcattggctgctgatgacgtcactctccacgatcgcGCCAGACCAGACTGCTTGTCGTGACAATCAGTGCTGATCTGTCCTGAGAGCCAAATCGGGTttaaaatcatgtagtgtgaccccgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4381 True 474 lncRNA 0.37 1 20588091 20588564

Neighbor

gene id symbol gene type direction distance location
AMCG00003836 NA coding upstream 254555 20333123 ~ 20333536 (+)
AMCG00003835 NA coding upstream 454736 20132773 ~ 20133355 (+)
AMCG00003833 NA coding upstream 643074 19944010 ~ 19945017 (+)
AMCG00003832 NA coding upstream 644254 19933174 ~ 19943837 (+)
AMCG00003827 NA coding upstream 956644 19630470 ~ 19631447 (+)
AMCG00003844 lama2,LOC107653134 coding downstream 699896 21288460 ~ 21296218 (+)
AMCG00003843 lama2 coding downstream 725510 21314074 ~ 21333224 (+)
AMCG00003845 NA coding downstream 759663 21348227 ~ 21438679 (+)
AMCG00003846 NA coding downstream 851550 21440114 ~ 21447121 (+)
AMCG00003847 NA coding downstream 903320 21491884 ~ 21535758 (+)
G3582 NA non-coding upstream 168161 20391190 ~ 20419930 (+)
G3563 NA non-coding upstream 329068 20239654 ~ 20259023 (+)
G3562 NA non-coding upstream 347937 20094038 ~ 20240154 (+)
G3550 NA non-coding upstream 689548 19898266 ~ 19898543 (+)
G3549 NA non-coding upstream 690181 19897585 ~ 19897910 (+)
G3635 NA non-coding downstream 188495 20777059 ~ 20801146 (+)
G3648 NA non-coding downstream 247173 20835737 ~ 20860294 (+)
G3661 NA non-coding downstream 315008 20903572 ~ 20908517 (+)
G3666 NA non-coding downstream 323578 20912142 ~ 20912988 (+)
G3670 NA non-coding downstream 337248 20925812 ~ 20927802 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 1190405 19271965 ~ 19397686 (+)
G3108 NA other upstream 2435777 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 2445458 18131919 ~ 18142633 (+)
G3047 NA other upstream 2904103 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 3545497 17032570 ~ 17042594 (+)
G3751 NA other downstream 960637 21549201 ~ 21549533 (+)
G3771 NA other downstream 1157286 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 1301959 21890523 ~ 21901865 (+)
G3799 med23 other downstream 1334072 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 2094452 22683016 ~ 22769227 (+)

Expression


Co-expression Network