G3626


Basic Information

Item Value
gene id G3626
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20594932 ~ 20598985 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4387
TGTGTTTCTGACTTCTCTAAACTCTAGCCTACTTATAACCTCTGTCCATTTTGCATTATTGGTCTGCTGTCCTAAGTGAGGTGGTTCTtgccttttgctttttttttagcctttttgttttgaaacctATTTGGTTTTTTGGTTGGTGTGCCTGgggctttttgttatttttgtaaggaTTTCAGTCTTGGATTGCCTTTTTGGACTTTGCAtcaatttttgttcctgttagAGTAtttgggaaatatatttttgttcattctTGATTGGATTACAAAGTCATTCCTGGTCCGGTCCTGGATCTTCGGCCTAACTCAAGGAGTGGTAAGACCAGCCAGTGGCTGAGAACTTTATTTTTTCGGGACTTCCATTTTGTCTCAGTTCTTTAAAGATCCTTCCTACTGTGCAGAGACTCAAAACTCGGGACACAAACAAATTGAATGCTGTTGTGAAAGACACAAAAACTTTTTCATATACTTCAGCGCGTACtcttttgttaatttgtatttgtatatactgtttGTTGTGTCGGTATAGGGGAATTGTTTGGGATACTTATGTACATGCACAAATTTTGAATAATACACTTTGGGTTTACAACTATATACTCTGCAGTCCTTATCCTCCCTATCTTTAAGTCTGGTGATCCCTTCGGTCTTTATTGGGAATCGTTACAGCGCTTTGCTCCTCCTGTAAGAGAGATCTATATTTTATTAGgggtttagatttgtttgtggCTCTTCCGTTACTGAAAGTGTCcagaattattgttttaaaatgttactagGTGTTTGAGTAGGCTCTGTGTATGTTCTGTTTTCTCATGCTGCTAGGGTGGTACTACTATCGGCCTTtccactctttctttcttttctctatcTCCCTGtctgagtttgtttttgtatacagGGTACTCTGCTGATTAGGCTTTGTGTCCTTCAGGACTTTCCAGTCTGCCacgtttttaatttctttactgatgttttcatttcttgagATAACTATCTTTGCTCGACCGAACAACAATCCACTTGATTTTTTATTAGGAGTTCGGAAACCAAATTAGGATTTCACTATTGCATTACCATAGAAAATTAGTGTCTAATATCTGTTTTCTTATTCTGCTACTGTGATTTTATTGAATGCTGTTATCGACTAACTGTTTGGAAGGACTGCCCTATGGCCTCTGTTGGGAGAGTCTGTTGGAGGGATTCCCCAATAACACTCTCCTGGGTGTGTGAGGCCTCTTGGTTATGGTTAATATGACATGTTGAATATTTGTATGAGAACTCCTCCCTAGTTTATCTCTGCTGATGCATAATTCTATTTCCATTCCACTAATGATCATATATGATTTCTCCCCAAACCTTTCCAATGCTTTCAAATTTAAACCCACAGGAACAGTACACAATGGCTCAATTGGGACCTACTAGCTTCATGTTGTTATTTCCAGATGGCCTTTATGACTACAATTACTGACTGTTGTGCtaaaactgtgtttttcatggtttgttCAAGTTCCACTCTCCAACCCTTCGGCAACACACCCTTTTCTGTCATCACTGCATATTATCCACAGGACACAAAGGTGGCTGAACAGGTGTCTACTACACAAATGGTGCTTCATTGCCCGCATACAGGTTCGGCCAACTGTTGTGCcctacaaaacacaaacattgtgTCTTCCGGTGACTGACACCCTGGTCATTGGAGACCCGGGGGCATCCTGAACGGTCTGGTGACCGCACCTCGGTGGCACGGGCCATTAGCGACGAACTTTGCACCTATTGCCCTGGCACATAGACCGCTTGCTGACACATTACAGACTCCTCCTGATTCCTTGCTCAAACCCTGGATGGAAATATAGCATGGACAATACTAGATGCAGCTGGGATCTGCACAGGTCAAAGACCTCCAATTAGTTGGAGCACTGTTTGCATGTTCTTCTGCTCTTTGTCTCTTGTAGAGTTTCTGCTTTCTGTCAATGTTATTATTTCCAATATCTTATTTTCTCTGCACCAAGAATAAtggaggtgcatctctctctggatttctgcgactCTTCACAGCCAAGTATTTCACATTAGTGCTCGACTTGCATCCAAGAAGCACAGCTCTGCATCAGGCTGTCCTGCTCGCATTGAAACTGATGTCAGAGCTGTTAATTCAGTGTAGCCTATTGATCGACAGAGTGAGGGACAGGAGGCAGGATCTAGACTACCAGCTTGGGAGAGTGACGGTATGATATTGTCAATCTTCCATATTTCGAACCTGGATTGGCTCTTCTCAATGTTATAATCAATCTTGTTAATAACAGCAAGTGTGCTGAACTTCAGCCCTATTTTTGAGTATTTTGGTGTTACAATGCGTACCAGTGTACTTAGATGTCAAAATGCATACAGGTTAGCAGGTCTGAGTTATGAATTATAAAAAcgatataaaacactttaaatgtgttctCTCTGGTACTCTTTAACCCGTAAATTACATTGACTCCTCTGCTAAAGTGGTGCAGTTGTTGCATTACACTGCATTGAGAAGAAGAGAAGTACACACAGGGTCTTCATCAATGAAGAAGTTGTTATGTGATAAggtaatgtattttactaatGGAAGCACTAAAATTGGaggttatatttatattttaaggtCAGTTGCAGTAACTTAATTTGTCTTTTACTGACTTATAAAATCCTGAGAGTATATAACCTCAGGCAACACTTATTATGCAACCATATTACAAGCttttatactgtaatatttaaatagattattattattattattattattattattaaacgtAGCAGATTTTAGTAAATGTACTCAATTTAACAGGAGCTTTTTATTTACTTCCGACTGAACTTGCATCTTTTGGTTTCATCAATACCTCACTTCAAACCTCAGAAAGATGAATTCATCCTTCATTCAGATGGACTCAGTACTCAGAGTACTGCTATGAAAATGTTACCAGATCCTGCATTAAACATTCCAGATTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4387 True 3001 lncRNA 0.41 2 20594932 20598985

Neighbor

gene id symbol gene type direction distance location
AMCG00003838 NA coding downstream 81956 20504099 ~ 20512976 (-)
AMCG00003837 NA coding downstream 516777 20077115 ~ 20078155 (-)
AMCG00003834 LOC101882414,LOC101885221,LOC107674786,LOC107572727 coding downstream 805107 19789393 ~ 19789825 (-)
AMCG00003831 NA coding downstream 917164 19677129 ~ 19677768 (-)
AMCG00003830 NA coding downstream 970091 19622609 ~ 19624841 (-)
AMCG00003840 NA coding upstream 291147 20890132 ~ 20898701 (-)
AMCG00003842 LOC106607755,LOC106571353 coding upstream 309405 20908390 ~ 20920636 (-)
AMCG00003841 LOC108432850,LOC106607755 coding upstream 351450 20950435 ~ 20959586 (-)
AMCG00003839 LOC106607755 coding upstream 431094 21030079 ~ 21042693 (-)
AMCG00003848 NA coding upstream 637509 21236494 ~ 21238978 (-)
G3618 NA non-coding downstream 8182 20586520 ~ 20586750 (-)
G3617 NA non-coding downstream 15361 20579364 ~ 20579571 (-)
G3616 LOC107575789 non-coding downstream 18018 20576012 ~ 20576914 (-)
G3607 NA non-coding downstream 174933 20391183 ~ 20419999 (-)
G3602 NA non-coding downstream 221989 20368005 ~ 20372943 (-)
G3646 NA non-coding upstream 231847 20830832 ~ 20831099 (-)
G3655 NA non-coding upstream 232385 20831370 ~ 20882144 (-)
G3695 NA non-coding upstream 306928 20905913 ~ 20953407 (-)
G3735 NA non-coding upstream 841141 21440126 ~ 21440361 (-)
G3736 NA non-coding upstream 845159 21444144 ~ 21444618 (-)
G3523 NA other downstream 1088179 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 1169566 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 1221707 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 2442551 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 2452251 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 2930534 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 3141600 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 3664922 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 5298949 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 5366435 25965420 ~ 25998628 (-)

Expression


Co-expression Network