G3798


Basic Information

Item Value
gene id G3798
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21917276 ~ 22016452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4605
TGCAAGATTACGAGTAAGACCAGGTCATCCAGCGTAAGAGAaattctttattcattttcaaatgtcttcGGTGATACCAGACATGGCAAATAAAAGGTTGCATCTCAGTTTTGTTTCAGCCTGACCTTAAAaggaaatgaacacaaaataaaaaccccTACTCGACCGCACGCTGCTATGTATGAAACTGACGGCACAAAACCCTTTCTCTGAGAAGGACATGGTATCTGAAAGGGAGGActaacaaacacagacaaacagatcAATGGTGTAATACATTATTGAGAAATGCTTTGTGCTGAAAAGGTCAGTTCAAGGCACAGTATGCTTGTGTTTACAGGAGTTTACAGAAAaggacaggttttttttttttgcttttctttttttagaaaaaaaaacatacagagtAGAAATAACCTCCTAGTACATCGTGTCTATACATACTCAGCAAGCATCCCACAGACATCAtcaatggataaaaaaaaataaaaaaaacatttacacaaccCCATTTTACAGTTCAGTAGTGATCCTGTAACTTTTTCCAAGATGCTTACAGTACTGCaaataatatgcaattattTACAGacaatttctgtgtttttcaagaGTTACTGAGCAAAATCAATGATTTCTCCCCTtctctgttttcttaaaaaaaggaaagaaaaagctaTCACTCAATGGTCACCTTTTACAAAAACGTAAAAGGTTTGCATTTCAGCCTTTATGTCTTTTGAGAAATGTCAATTTGtggaaattacacatttcatgtAAAGGTGTTGCCCCCTGACCCAGAGCTCTACTGCGCCACAGACAGGGGCACACTGACCGGGCCCTGGGCTGACTGCGGCGCTGGGGAAGACACACTGGCTGGCTGGGGGGCCGTCGCTGGCTCCATTTTGCTGATATGGGTGATAAATCGCAGGCGAAGCTTCACAGCTGGTCTCAAATTGCATATGATTTTTTCCACctgtaaaaataacacaaaaaagcagGAGGTAAAAGATAAACTTTTGGTTAATATACAACAGTtggtctcaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106534789 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4605 True 1045 lncRNA 0.39 2 21917276 22016452

Neighbor

gene id symbol gene type direction distance location
AMCG00003854 NA coding upstream 54477 21857490 ~ 21862799 (+)
AMCG00003847 NA coding upstream 381518 21491884 ~ 21535758 (+)
AMCG00003846 NA coding upstream 470155 21440114 ~ 21447121 (+)
AMCG00003845 NA coding upstream 478597 21348227 ~ 21438679 (+)
AMCG00003843 lama2 coding upstream 584052 21314074 ~ 21333224 (+)
AMCG00003861 NA coding downstream 84836 22101288 ~ 22106730 (+)
AMCG00003873 NA coding downstream 458635 22475087 ~ 22498055 (+)
AMCG00003871 NA coding downstream 497283 22513735 ~ 22523525 (+)
AMCG00003872 NA coding downstream 511907 22528359 ~ 22536293 (+)
AMCG00003876 NA coding downstream 807318 22823770 ~ 22829038 (+)
G3770 NA non-coding upstream 157477 21750527 ~ 21759799 (+)
G3767 NA non-coding upstream 184577 21732491 ~ 21732699 (+)
G3757 NA non-coding upstream 316416 21600632 ~ 21600860 (+)
G3754 NA non-coding upstream 318846 21595856 ~ 21598430 (+)
G3690 NA non-coding upstream 827022 21089595 ~ 21090254 (+)
G3845 NA non-coding downstream 60540 22076992 ~ 22077458 (+)
G3863 NA non-coding downstream 153888 22170340 ~ 22172105 (+)
G3871 NA non-coding downstream 166791 22183243 ~ 22184811 (+)
G3878 NA non-coding downstream 180862 22197314 ~ 22200678 (+)
G3884 NA non-coding downstream 208266 22224718 ~ 22225101 (+)
AMCG00003853 NA other upstream 15411 21890523 ~ 21901865 (+)
G3771 NA other upstream 156646 21745850 ~ 21760630 (+)
G3751 NA other upstream 367743 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 2519590 19271965 ~ 19397686 (+)
G3108 NA other upstream 3764962 18146660 ~ 18152314 (+)
AMCG00003874 NA other downstream 666564 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 1316149 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 1505374 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1693577 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1822137 23838589 ~ 24042885 (+)

Expression


Co-expression Network