Gene
RNA
| Item | Value |
|---|---|
| gene id | G4000 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 22856026 ~ 22856405 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | description |
|---|---|
| ko04120 | Ubiquitin mediated proteolysis |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU4843 | True | 261 | lncRNA | 0.43 | 2 | 22856026 | 22856405 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003875 | NA | coding | downstream | 54797 | 22790248 ~ 22801229 (-) |
| AMCG00003870 | pde7b | coding | downstream | 298139 | 22535586 ~ 22557887 (-) |
| AMCG00003869 | NA | coding | downstream | 324202 | 22515779 ~ 22531824 (-) |
| AMCG00003868 | NA | coding | downstream | 347509 | 22493463 ~ 22508517 (-) |
| AMCG00003867 | ppp1r14c | coding | downstream | 422139 | 22433618 ~ 22433887 (-) |
| AMCG00003880 | tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 | coding | upstream | 226533 | 23082938 ~ 23089596 (-) |
| AMCG00003888 | rps12 | coding | upstream | 459801 | 23316206 ~ 23319144 (-) |
| AMCG00003887 | NA | coding | upstream | 465924 | 23322329 ~ 23333559 (-) |
| AMCG00003886 | sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 | coding | upstream | 485839 | 23342244 ~ 23359840 (-) |
| AMCG00003895 | NA | coding | upstream | 786399 | 23642804 ~ 23653555 (-) |
| G3984 | NA | non-coding | downstream | 84242 | 22771572 ~ 22771784 (-) |
| G3898 | NA | non-coding | downstream | 495930 | 22359785 ~ 22360096 (-) |
| G3885 | NA | non-coding | downstream | 630933 | 22224855 ~ 22225093 (-) |
| G3882 | NA | non-coding | downstream | 655348 | 22197601 ~ 22200678 (-) |
| G3864 | NA | non-coding | downstream | 685661 | 22164164 ~ 22170365 (-) |
| G4039 | NA | non-coding | upstream | 188910 | 23045315 ~ 23115685 (-) |
| G4101 | NA | non-coding | upstream | 543456 | 23399861 ~ 23423473 (-) |
| G4130 | NA | non-coding | upstream | 697871 | 23554276 ~ 23554524 (-) |
| G4174 | gtf2h5,tf2h5,LOC107659223,LOC107721375 | non-coding | upstream | 964285 | 23820690 ~ 23822698 (-) |
| G4222 | NA | non-coding | upstream | 1187263 | 24043668 ~ 24046142 (-) |
| G3523 | NA | other | downstream | 3349273 | 19444016 ~ 19506753 (-) |
| G3517 | LOC101154678 | other | downstream | 3430660 | 19424963 ~ 19425366 (-) |
| AMCG00003825 | NA | other | downstream | 3482801 | 19361818 ~ 19373225 (-) |
| AMCG00003782 | ctsb | other | downstream | 4703645 | 18146660 ~ 18152381 (-) |
| AMCG00003784 | NA | other | downstream | 4713345 | 18135379 ~ 18142681 (-) |
| AMCG00003893 | NA | other | upstream | 673114 | 23529519 ~ 23533882 (-) |
| AMCG00003896 | tmem181 | other | upstream | 884180 | 23740585 ~ 23757796 (-) |
| AMCG00003909 | NA | other | upstream | 1407502 | 24263907 ~ 24296246 (-) |
| G4521 | fig4 | other | upstream | 3041529 | 25897934 ~ 25901612 (-) |
| AMCG00003946 | NA | other | upstream | 3109015 | 25965420 ~ 25998628 (-) |
