G4039


Basic Information

Item Value
gene id G4039
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23045315 ~ 23115685 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4887
caagaaaaaaacaaaaaNNAAACACATgtaagggccagattaaaactGATCTTTTGCCCATCCcctaaattgcaaattacaactAGTAcctgacaattattatttatataggtCTCTGGTGAGATATATAATTCATCACCAAGTACAGATTTTCAAAATTTGCAATtagctggtgggtcaaagttatGATTTAATCCCATCCTAGATCCCATCCTAAAGTTATTGAAATTAGAAATCTACAGCAAATTTGTCATCTTCCAAAATTGGAAGCAGCAATCAATGCCCCATATTGCAGTGTCAGCCCACATGAAGTCATTTTGATGCCAAGGCCCGTGAACACAGAACGTCCACATGCCACACCAAAACTGTTTGTTCACATTGAGAagttcaacaacaaaaaaaataattctaaagCCAACCACTGAAGAATGAGACCTCCAGATCAAGAAAAGATCTTGAGAGGAAAAAGGCACCTTGCAAAAAGTCCTTGTGTAACATTCATGATCCCAACAAATTATTAGTAGTTGTTGACACCGTTACGGTTCCTCTGCTAGCAGACTCTGCAGGAAATTCACCCAAAGGAAAACGGCATCCAGATCTTGGGGACACAAAGAGAACTGTGCTTGTTGAGTTCTTCTCATCAACTCAGACCACTTCTTTAAGTTAAGGCCACAAAGCTGCCTCAATCGATGTGCAAATATTTCACCTTCCAGGAGGGTCTCGTGCAAGACCAATCTGTCAGTGTCGGGCAAGTCcataagttattttaaattacaagtaAGAGTCCATGGATGGGGCGTAGGAGAATCCCAGAAAAGCTTCAGCTGCTTCCTTGATGCTTGCTGTAATCAGGGCGCTGTCTGGGGAACAGCCAATGGAGTTTGGAACGGGCTCGTCTGTAAACTCTGGATCGAAGTGCCGCAGATCATTGGGGCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4887 True 937 lncRNA 0.41 2 23045315 23115685

Neighbor

gene id symbol gene type direction distance location
AMCG00003875 NA coding downstream 244086 22790248 ~ 22801229 (-)
AMCG00003870 pde7b coding downstream 487428 22535586 ~ 22557887 (-)
AMCG00003869 NA coding downstream 513491 22515779 ~ 22531824 (-)
AMCG00003868 NA coding downstream 536798 22493463 ~ 22508517 (-)
AMCG00003867 ppp1r14c coding downstream 611428 22433618 ~ 22433887 (-)
AMCG00003888 rps12 coding upstream 200521 23316206 ~ 23319144 (-)
AMCG00003887 NA coding upstream 206644 23322329 ~ 23333559 (-)
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding upstream 226559 23342244 ~ 23359840 (-)
AMCG00003895 NA coding upstream 527119 23642804 ~ 23653555 (-)
AMCG00003900 tulp4 coding upstream 644917 23760602 ~ 23786763 (-)
G4000 NA non-coding downstream 188910 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 273531 22771572 ~ 22771784 (-)
G3898 NA non-coding downstream 685219 22359785 ~ 22360096 (-)
G3885 NA non-coding downstream 820222 22224855 ~ 22225093 (-)
G3882 NA non-coding downstream 844637 22197601 ~ 22200678 (-)
G4101 NA non-coding upstream 284176 23399861 ~ 23423473 (-)
G4130 NA non-coding upstream 438591 23554276 ~ 23554524 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 705005 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 927983 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 1009166 24124851 ~ 24125052 (-)
G3523 NA other downstream 3538562 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 3619949 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 3672090 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 4892934 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 4902634 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 413834 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 624900 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 1148222 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2782249 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2849735 25965420 ~ 25998628 (-)

Expression


Co-expression Network