G4058


Basic Information

Item Value
gene id G4058
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23315628 ~ 23319122 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4910
CTGGTAATGCTTAAGTCACCCAACAATATACTATACACTGTACTAAGCTGACCAATACTTAcatatggtttaaaaaaaaaaaaacaccggACATGCTGGTGCTTTATATGTTCGGGGACAAACTATCCCCATTAAACTGAATTCATAGGTGTACATGTGGTTTACTAGAAATACACTAAATCAGTGTTAAATGTACACTGAACTCTGCACAGATAGCAGCTACTGTATGAAGTGTTTCCCAAAATGTCAAACTATTACTCCTcctataaaagaaaatcaaagttGTCACATCTACATGGCAACAGTTTTCATCCAGGATCAAGTCATTACCCTGCAAACGCCGATCATGTTCACACAACCGGCACTGATGGATTCATGAATAAGTGTTCGTGCTGCCTAATGTTTTCAAGATCAATAAATCCCCACTGGCACCATTCCaggttaaaaaaagtattactaGTAAGATCTGTGCTTCATATAGTTCTACACACTGCAATGTGGCATATTTAGCATAAACCTACAAcagtttaaaatcacatttctgcttggaatgtactttaaaaaaagtactAGAGTAGATTAACTactttacactttacattttattgcatcaATGTATTCCCTCTGGCTTTTAGTTTTGCACACCCAGCAATGCATGTTCATCTACTGAGCAGGAGACCTACACTGTAGAGGTACAGGATCAAATTCTACAAACCACACCAGTCAGCTTCTGTTTCAAATGCGTTTATTCACACATTATTTCTTGGCCTTAAAGTACTCTTCAATGACATCCTTGGCTTGAGATTCCTTGCCGTAACCTTGATGACAACACAACTGCAGCCAACAACCTTGCGTGGCTTGCCTTCCCTGTCAATCTTGCAGAGGCCGACCCACTCACCAAGCTTCTTGTTATCATCGACTTGATGAGGTTGATCTGATGCTCGGCACAGAGCGCCTCCACGAGCTTCACATACATGGGCTCATCACAGTTGCCAGCAAGAACACAGAGATGGGCTTGGCGTTGTCCAGCGCTTTGGCAGCTTCGCGGATGCCGCGGGCTAAGCCATCGTGGATCAGTGCGGTCTTCAGCACCTCCTGGAGAGCAGTGTTAACATCCATCACACCTCCAGCAGCGATGCTTCAgcccagagacacagagaggcatgTTAGTCTTCACAGCACATCACCGAGGAGCTGCAGCTGAGCGCAACATGTGCAGCTACCGGCATGTCAGAAGGAGGATCTCACTCATGATTAGAGTGAAGGGGTATCCGACTAAAGAAGTGAAATCATCATAATCATGCTGTAGCTTCACTGCGCCATTGCTTCTGAAAACAGGACACATACTATAGATACGCGATCAAAGCATGCGTTTATACGTGCTGGCAAGTCTGCGAGTTACCGGAACACACTACTGCTATGCAATAACAGTGTTTTAACAGATCTACATGCACGGAACATCTCGCAGTGTCGTGAGCTTTAATCGCACATTATTCAACTACCTTTCCTTTCACTCACTGCGCATGTGAGGGGCTTTAACTGCACGTCCCCAGGTGCCACAGAGTAACAGACGTCAAACTTACCCTTCCTCGGCCATTGTAGATTATCGGTGGATGTTGGACTTAAATTGctgcaatataaaaatagaccGGTGGATTTGTTAGTGCCCATGTTAGTTCGATAACTTCGACTTCGGTAAAACGAAggatgttttgtatttttgacgGATtccgagacacacacaaaaactcacCCAAACCTCCTCTCTGACAGCGGAAAAAGAGGACGTCACAGCGTCGACGTCATTATTTTAAGCGCCCAGAGAGGAAGGACCCCGAGCAGGCTGTACATTTAGTTGCCGGACAAGTTGCCCAACTAGAAAACAACGTGTGTTTTTAAGCACGTGTGATTAATTCAATGCTACCCAAATCTGCATCTGTTTAAAATAGACAGACGTCCATATGGTTGGTAGAAAATGTCTGCTTCACTTTCTATTCGACTTTATTGATTATAGATTAAGTTGATATAAAATTCTACTTGAAATAAAAAGCAG
>TU4913
CTGGTAATGCTTAAGTCACCCAACAATATACTATACACTGTACTAAGCTGACCAATACTTAcatatggtttaaaaaaaaaaaaacaccggACATGCTGGTGCTTTATATGTTCGGGGACAAACTATCCCCATTAAACTGAATTCATAGGTGTACATGTGGTTTACTAGAAATACACTAAATCAGTGTTAAATGTACACTGAACTCTGCACAGATAGCAGCTACTGTATGAAGTGTTTCCCAAAATGTCAAACTATTACTCCTcctataaaagaaaatcaaagttGTCACATCTACATGGCAACAGTTTTCATCCAGGATCAAGTCATTACCCTGCAAACGCCGATCATGTTCACACAACCGGCACTGATGGATTCATGAATAAGTGTTCGTGCTGCCTAATGTTTTCAAGATCAATAAATCCCCACTGGCACCATTCCaggttaaaaaaagtattactaGTAAGATCTGTGCTTCATATAGTTCTACACACTGCAATGTGGCATATTTAGCATAAACCTACAAcagtttaaaatcacatttctgcttggaatgtactttaaaaaaagtactAGAGTAGATTAACTactttacactttacattttattgcatcaATGTATTCCCTCTGGCTTTTAGTTTTGCACACCCAGCAATGCATGTTCATCTACTGAGCAGGAGACCTACACTGTAGAGGTACAGGATCAAATTCTACAAACCACACCAGTCAGCTTCTGTTTCAAATGCGTTTATTCACACATTATTTCTTGGCCTTAAAGTACTCTTCAATGACATCCTTGGCTTGAGATTCCTTGCCGTAATCCtaaagagagagaaggcagaCAAACTGAGAATTTTTCCTGAGATACTTGCCAGCAGGAGTGCCACTGCTTTACAGTGACAATATTTAAGGAGTACGCGTTAAAAACACTCTTTCAACCATGTTAATATAACTCACAAATTTTAATAGACTAGCCAATAGTTCACTCAAATTACTCTTGAAATGATCAATTACTCTAATCACATTCCCAGGAACTACACAAATGATTAGCACTTCATCTGAAGCTTGTACTCCGGCCctgcttttaaaatcacaacTGCATCAGACAATTCAACAGTTCTCTCCAAATGAATCCATCGGCTCACCTTGATGACAACACAACTGCAGCCAACAACCTTGCGTGGCTTGCCTTCCCTGTCAATCTTGCAGAGGCCGACCCACTCACCAAGCTTCTTGTTATCATCGACTTGATGAGGTTGATCTGATGCTCGGCACAGAGCGCCTCCACGAGCTTCACATACATGGGCTCATCACAGTTGCCAGCAAGAACACAGAGATGGGCTTGGCGTCTGGAAGGGAAAGTAATTCAGTGCTTTCAAGATCCAGTCCGAGAGCCCCTACccaacaggttttataggtgACCTTTAATCAGTTTCATAACACCTGGTACAatttcaatgtgatcaattaagcatTAAGATTTGGGATAAAGAAAATGAGCTACTCTTTTGAATGACCAGaatcccttaattgaacaaattacttaattggaaaaTAACTTGCATGTAGCTCCTGTCTGTTCAAATTAGTGTTTTGGGGTGACTGACAAAACCTAATGGATACGGACTCTCCAGGACCATTTCTGGACACCACTGGTCTAATTAACTTGCATACAGTTTTGAGAAGGTGGCGAGAGGAGTTCTGAATCAGTACTTTTAACATGTAGGAGGCTGAAGTACTATGTACTAGGTCACGGAAAAGCCTAAGTAGTGTCTTGGGAAGTGTAGAAGGCCAATGGCTTTGGAGGAtgtagtccagtccagttaAATAAATGGGCAGAGAAACAAGTACCCCCTCCTCCTAGACTCGCTACATTAGATTGTGAACCACCTGAAGCTCTCTCGGCTCTTCAGCCATTAACAGAGGCGCTCCTCTCCGCAGTCTTCAGCACAGACACCCCGGCCCGCGCCTGCGCACTGAGGGCTCGGAGGGACAGCACTTACTTGTCCAGCGCTTTGGCAGCTTCGCGGATGCCGCGGGCTAAGCCATCGTGGATCAGTGCGGTCTTCAGCACCTCCTGGAGAGCAGTGTTAACATCCATCACACCTCCAGCAGCGATGCTTCAgcccagagacacagagaggcatgTTAGTCTTCACAGCACATCACCGAGGAGCTGCAGCTGAGCGCAACATGTGCAGCTACCGGCATGTCAGAAGGAGGATCTCACTCATGATTAGAGTGAAGGGGTATCCGACTAAAGAAGTGAAATCATCATAATCATGCTGTAGCTTCACTGCGCCATTGCTTCTGAAAACAGGACACATACTATAGATACGCGATCAAAGCATGCGTTTATACGTGCTGGCAAGTCTGCGAGTTACCGGAACACACTACTGCTATGCAATAACAGTGTTTTAACAGATCTACATGCACGGAACATCTCGCAGTGTCGTGAGCTTTAATCGCACATTATTCAACTACCTTTCCTTTCACTCACTGCGCATGTGAGGGGCTTTAACTGCACGTCCCCAGGTGCCACAGAGTAACAGACGTCAAACTTACCCTTCCTCGGCCATTGTAGATTATCGGTGGATGTTGGACTTAAATTGctgcaatataaaaatagaccGGTGGATTTGTTAGTGCCCATGTTAGTTCGATAACTTCGACTTCGGTAAAACGAAggatgttttgtatttttgacgGATtccgagacacacacaaaaactcacCCAAACCTCCTCTCTGACAGCGGAAAAAGAGGACGTCACAGCGTCGACGTCATTATTTTAAGCGCCCAGAGAGGAAGGACCCCGAGCAGGCTGTACATTTAGTTGCCGGACAAGTTGCCCAACTAGAAAACAACGTGTGTTTTTAAGCACGTGTGATTAATTCAATGCTACCCAAATCTGCATCTGTTTAAAATAGACAGACGTCCATATGGTTGGTAGAAAATGTCTGCTTCACTTTCTATTCGACTTTATTGATTATAGATTAAGTTGATATAAAATTCTACTTGAAATAAAAAGCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU4910 False 2053 lncRNA 0.47 4 23315628 23319122
TU4913 True 3032 lncRNA 0.36 2 23315628 23319122

Neighbor

gene id symbol gene type direction distance location
AMCG00003885 eya4 coding upstream 1751 23237346 ~ 23313877 (+)
AMCG00003881 tcf21,LOC107701707,LOC107571274,LOC107756361,LOC107723756,LOC107671849,LOC105018007 coding upstream 178387 23135448 ~ 23137241 (+)
AMCG00003882 NA coding upstream 234114 23073014 ~ 23081514 (+)
AMCG00003883 NA coding upstream 249698 23061960 ~ 23065930 (+)
AMCG00003879 sgk1 coding upstream 269396 23041823 ~ 23046232 (+)
AMCG00003889 NA coding downstream 55171 23374293 ~ 23389309 (+)
AMCG00003892 NA coding downstream 91213 23410335 ~ 23423173 (+)
AMCG00003894 phip,LOC107708770 coding downstream 126700 23445822 ~ 23447419 (+)
AMCG00003890 NA coding downstream 140718 23459840 ~ 23520587 (+)
AMCG00003897 dynlt1,dylt1 coding downstream 416680 23735802 ~ 23740462 (+)
G3991 NA non-coding upstream 446489 22868878 ~ 22869139 (+)
G3915 NA non-coding upstream 813799 22500917 ~ 22501829 (+)
G3914 NA non-coding upstream 814802 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 910774 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 1075530 22236096 ~ 22240098 (+)
G4071 NA non-coding downstream 42914 23362036 ~ 23362447 (+)
G4089 NA non-coding downstream 47069 23366191 ~ 23369996 (+)
G4162 NA non-coding downstream 448286 23767408 ~ 23767759 (+)
G4163 tulp4,LOC102289060,LOC104963868,LOC107597860,LOC102779174 non-coding downstream 454618 23773740 ~ 23774052 (+)
G4164 NA non-coding downstream 455518 23774640 ~ 23774943 (+)
AMCG00003874 NA other upstream 546401 22683016 ~ 22769227 (+)
G3799 med23 other upstream 1391841 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 1413763 21890523 ~ 21901865 (+)
G3771 NA other upstream 1554998 21745850 ~ 21760630 (+)
G3751 NA other upstream 1766095 21549201 ~ 21549533 (+)
AMCG00003884 NA other downstream 13479 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 202704 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 390907 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 519467 23838589 ~ 24042885 (+)
AMCG00003910 zbtb2b other downstream 799262 24118384 ~ 24129892 (+)

Expression


Co-expression Network