G4059


Basic Information

Item Value
gene id G4059
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23315334 ~ 23322675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4923
ggtgttcctaataatcctttaggtgagtgtatatatatatacacatatatacatacacactcacacatacataccCACACATAATATAATTAACCATAattgggtacaagtttgtaatttgcaatttgtggaTGGATCACTGTTCTAAATTTGGTGCAGGCCTAGCAATGCACCCTCAAATCTGAATACCTGGCCATAAAAGTTCTTGCACACAAAAGTGTCAATTATTTGAACATAACAATTATAAAGTTAGGTTTAAGGTTGATGTGTTAATGCAAGGACAGTGTTTGTTAACAGgattttagattaaatattttaagaaaattataaaagatagctctggactcctgaacagagggttgtgggttcaatcccaggtggaggacactgctgctgtacccttgagcaagagactgtacctagattgctccacttaaaacccagctgtataaatgggtaattgtatgtaaaaagtaatgtaatatattgtaaatattgtatatattgttcaAAATACTAGAACAAAGACATTGTTGCTTGTCAAACCCAAGCTGTTAGTGTTGGCTGTGGACCCTACTACCTACTGCGGCTTCATGAGTGATGAGTGTCAGCCTAGAACAGGGATTCCCTAACCATTACCCCCAGTCCCCCCGTTCTGCTGGATTTCATTCCGagcttttaattacttaattgaaccatatattgcattgttagttaaTTTAAGGATTCAATAAGCAATTCAGAACAAGGAAcagtagggcagggggtactccatgACAGATTTGGAAATCGCTGGACTAGAATCAAACCTGCAGCTCCCAGGCTAGGGTTTAGGTTTGTTGCAGCtcaaaattatacttttttttttccccctcattaatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgctgttattctgtctctcactgttaaaatacagctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttttccctcactgtataactcAATACCAGATTCAACGGATTTTCAAGTaaaccattttatatttatgtttgtaatttatttgcaaataagGTTATGAGTATACTTATCATCTACTCTGTAGGAATCAAGAATTCaaattatagatttttaaaatcgttttccttttaattataatagaaaagttttaaaaaaaaagtataatttactCCTTCTTATCATTTTTTTGagctttttccctcactgtatattaaatacaattagcAGTGCATCttagcaaaacaattaaaaattaataaagatCTTTCTTGCcttcattattacaaatataatctaGAGTCTCCACATTCAGTGAGTTAGTTACGGTCCTTCAGTAATTCTTCAGTGCGGCTCAGATTAACTCTGGTTCAGGAGCAGAGTTCTTTCACTGTTAGATTCATTCTCAGCTACTTGAGGAGATCTAAGATCAAGacaagttaatttattattgagaGTTACCAGTCTTTACCACTGAATATACTGCAAACTAGATACACATTCTGaagcatttattcattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4923 True 1608 lncRNA 0.34 3 23315334 23322675

Neighbor

gene id symbol gene type direction distance location
AMCG00003885 eya4 coding upstream 1457 23237346 ~ 23313877 (+)
AMCG00003881 tcf21,LOC107701707,LOC107571274,LOC107756361,LOC107723756,LOC107671849,LOC105018007 coding upstream 178093 23135448 ~ 23137241 (+)
AMCG00003882 NA coding upstream 233820 23073014 ~ 23081514 (+)
AMCG00003883 NA coding upstream 249404 23061960 ~ 23065930 (+)
AMCG00003879 sgk1 coding upstream 269102 23041823 ~ 23046232 (+)
AMCG00003889 NA coding downstream 51618 23374293 ~ 23389309 (+)
AMCG00003892 NA coding downstream 87660 23410335 ~ 23423173 (+)
AMCG00003894 phip,LOC107708770 coding downstream 123147 23445822 ~ 23447419 (+)
AMCG00003890 NA coding downstream 137165 23459840 ~ 23520587 (+)
AMCG00003897 dynlt1,dylt1 coding downstream 413127 23735802 ~ 23740462 (+)
G3991 NA non-coding upstream 446195 22868878 ~ 22869139 (+)
G3915 NA non-coding upstream 813505 22500917 ~ 22501829 (+)
G3914 NA non-coding upstream 814508 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 910480 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 1075236 22236096 ~ 22240098 (+)
G4071 NA non-coding downstream 39361 23362036 ~ 23362447 (+)
G4089 NA non-coding downstream 43516 23366191 ~ 23369996 (+)
G4162 NA non-coding downstream 444733 23767408 ~ 23767759 (+)
G4163 tulp4,LOC102289060,LOC104963868,LOC107597860,LOC102779174 non-coding downstream 451065 23773740 ~ 23774052 (+)
G4164 NA non-coding downstream 451965 23774640 ~ 23774943 (+)
AMCG00003874 NA other upstream 546107 22683016 ~ 22769227 (+)
G3799 med23 other upstream 1391547 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 1413469 21890523 ~ 21901865 (+)
G3771 NA other upstream 1554704 21745850 ~ 21760630 (+)
G3751 NA other upstream 1765801 21549201 ~ 21549533 (+)
AMCG00003884 NA other downstream 9926 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 199151 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 387354 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 515914 23838589 ~ 24042885 (+)
AMCG00003910 zbtb2b other downstream 795709 24118384 ~ 24129892 (+)

Expression


Co-expression Network