G4101


Basic Information

Item Value
gene id G4101
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23399861 ~ 23423473 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4977
GacaggtttcttttttattttaaaatagttccATGGAATTAATCCCAAACAGGCAATGGATGATCACAACTATCAACATtggtccccccccccacattaACTTTTAGTACAAAGCACCACTGATTATTGCTATGTAAAACTGtcagaaataaaagtaatacatagaagaagaaaatgtcaaaCACACAAGTCACTACAAGCTCTAAAGCGTtcttaaaaagaataaaaaaaacatcgcGCAGAGTGCCAGTCCACGAGGAATGCTTATCCAGCCGCACGTCTGAGAATCGCAATtcaggtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagctgagaaCAATGAGGTGAAGTTGAAAAGAAATTCTACTGCAGGAAAGCGGCTTGATAGAAGAAGTATGAACAGTGCATACTGGTTAATTCCACTACCACAGGTCTAAAAAAATTAGCATTTACAAAATACTTGATAAAAAATATTCTTCTTTCCAATTGTACAAGAGGTGCATAAAATCAACTAAAAGTTCATGTAAGATGATTCActcattctttcttttcagcTGCTGGCTCAGTTTTCTGTTCCTAAatggagagggggggagagaaagaaaacagtcaAGTTCCGGAAAAGCTCTTGGGAGCAGAAAGCCAAACCAAAACACACCACCGCAAGACATACAGGACTCGGTTATCATGATGAAGCCACAACAAATGCGCTTTAATTAAGATTAATGAaaccggaaaaaaaaaaaaaaaaaaattaacaaagcaAGTGATTTTATTCCACAGTTAAGCTTACCTCAAGATTTcaagaacattaaaatacactggAAATAAAAGTGGTTCCAATTTTTCCTACAGGGAATTAATGTACCTTTGCATTGTAATGGACAGTCTCTTAACAGCAAAGTAAAACAGTGCAAGAATGTAATAATTCCAAGTGCACGTACAGATACGCAAAATGATCAATTACCACACTTATACTCAATTTATGCATTCAAATTGCAAGTGGTGGAAGGCAATTACAATTAAATCGAGGTAATTAAAGAATGCAGATTAAGATGAAGCCGGTCTTGCTAATTACCTTCCCAAAGATGACATCTAACATCAATAAACGCACACCTAAAAAACGATCATTAAAACGTGAGAAATGAGTTTCGGGCTTCACAAACTCTGTGGTTTTCAGCTTTGGCATCGAACCCCGAGGTCAGTTTATTTTCCCATGTGCACACTGTGTTTAACAGCCCGATGACATTCTCACACTCTTCACTGTAATTCCCAGATACCCGACTACCACCCCGTGATCCCATGACAATGTGTAAATCATTTGCCAAACACACTAGCATAGCAAACAATGGACTGGACAAAGTCAAACATGGCATGTCAGACTGAGCTGGAGAGTGGCGTTCGGGGGG
>TU4978
GacaggtttcttttttattttaaaatagttccATGGAATTAATCCCAAACAGGCAATGGATGATCACAACTATCAACATtggtccccccccccacattaACTTTTAGTACAAAGCACCACTGATTATTGCTATGTAAAACTGtcagaaataaaagtaatacatagaagaagaaaatgtcaaaCACACAAGTCACTACAAGCTCTAAAGCGTtcttaaaaagaataaaaaaaacatcgcGCAGAGTGCCAGTCCACGAGGAATGCTTATCCAGCCGCACGTCTGAGAATCGCAATtcaggtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagctgagaaCAATGAGGTGAAGTTGAAAAGAAATTCTACTGCAGGAAAGCGGCTTGATAGAAGAAGTATGAACAGTGCATACTGGTTAATTCCACTACCACAGGTCTAAAAAAATTAGCATTTACAAAATACTTGATAAAAAATATTCTTCTTTCCAATTGTACAAGAGGTGCATAAAATCAACTAAAAGTTCATGTAAGATGATTCActcattctttcttttcagcTGCTGGCTCAGTTTTCTGTTCCTCGTCAGTCTTGGTCTCCCCGTTCTCGGCCAGCGCGGCACCTGCGTCCACTTTTTCGTCTTTCTTCCCTTTTCcgccttttttcccttttgcagCTGCCTTTTCCGCAACTTGTTTCTTCACGGCTGGCTTGCTTGGCTTGGGCTCAGGTTTGGGTGGAGGAGGTTTAGCTGACAATCTCTGGGATCTTCTTGTTGgCTCCTGTTTTGTGACTTTAGTTGAATCTTTGCCTTCAGCACCCTCTGGAGACTTCCTTTTCGGCATGTttgcagtgtttcttttttaaatatatatagtacaagATGAAAGGCGAGCTGCAAGACGCGAGTTTGTAACTAACACAGAATACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4977 True 1423 lncRNA 0.37 2 23420998 23423473
TU4978 False 941 lncRNA 0.34 6 23399861 23423473

Neighbor

gene id symbol gene type direction distance location
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding downstream 40021 23342244 ~ 23359840 (-)
AMCG00003887 NA coding downstream 66302 23322329 ~ 23333559 (-)
AMCG00003888 rps12 coding downstream 80717 23316206 ~ 23319144 (-)
AMCG00003880 tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 coding downstream 310265 23082938 ~ 23089596 (-)
AMCG00003875 NA coding downstream 598632 22790248 ~ 22801229 (-)
AMCG00003895 NA coding upstream 219331 23642804 ~ 23653555 (-)
AMCG00003900 tulp4 coding upstream 337129 23760602 ~ 23786763 (-)
AMCG00003899 NA coding upstream 400304 23823777 ~ 23845018 (-)
AMCG00003901 NA coding upstream 423548 23847021 ~ 23852940 (-)
AMCG00003906 NA coding upstream 623681 24047154 ~ 24075283 (-)
G4039 NA non-coding downstream 284176 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 543456 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 628077 22771572 ~ 22771784 (-)
G3898 NA non-coding downstream 1039765 22359785 ~ 22360096 (-)
G3885 NA non-coding downstream 1174768 22224855 ~ 22225093 (-)
G4130 NA non-coding upstream 130803 23554276 ~ 23554524 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 397217 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 620195 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 701378 24124851 ~ 24125052 (-)
G4256 NA non-coding upstream 705068 24128541 ~ 24129966 (-)
G3523 NA other downstream 3893108 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 3974495 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4026636 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 5247480 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 5257180 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 106046 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 317112 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 840434 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2474461 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2541947 25965420 ~ 25998628 (-)

Expression


Co-expression Network