G4222


Basic Information

Item Value
gene id G4222
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24043668 ~ 24046142 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5141
aacgtacaaaatcagcaggggatcaaatacttttttcccccactgtacatggTACTATTACTGCAATggacaaaatgtatttggtcAGAAGATTGGTGACATTTATCACTGACCTGGGAATTGTAAGAACTGTTATTGAATCTAACCTGATATGAAGATCAATACTAAACAAGCATGGTTGTGATTGACTTTGTACAAAATTCAGAAAGTGCCTACGTGCTGACAGAGTTGATAATAGTATAtatagggaaaaaaacaaactgaaactgtGGTACTTTTCagcaacacatttttacattgtacatttctaaacaaaaccaaacaaacaaacatctattttatatttgaattataagaaaacattgttaaaattgAATTGATCTGCATGGACCACAATGGCTGGATTATTTATCCTTTAATAAGTCATATTTTGCTATTATAAAACCTTTTTGGCACCTAAGATAGCTACCTGAACCGTACTTATCAAAGCAAGTAAAGAACTGGAGAGTGAACGATCGTTAGACAATATcctttagaaatgtaaatacaattattaattgtaattataggATGAAAATCACACTAAAGAAACCAGAGATGGGTAATATCACTACaataattttgtcatttttctttgaggaaatatttaaatattaaaaatcagtAAATTAAGTTATATGCAagataaaaaatctaaataaaaatatacaacctAGAGTTTTTTTGTAGCACAAAATACACAGTAttaaattctattttttatgCATTACGATCCTGTTGACAATTTTTCATACAACTCATTAGATCTTTAAACTGAGCACGTCCCTTAGACACTTAGGACTTAGGACTAGTAGCTGACTGGAGTCTTTTTCTGTGGTTTTGTAACTCAACATCGGTTGGCTTGGTTGTCAATGTAGCGTTCAGTTATTGGATTATAGGATTATGTTTTGTATCAAGAAGGAAACTGTTTAGAAGGTAGATGATGACtaattgagaaataaaataagctatAGGCTTTCACATTGTTATAAACCTCACAATGTCCTACTGGAAGATGGCATGGGCATAGACagatgaatgtattaatttctcaATCGTTTCACTACACTGAAGTCTTGAACTCTTGAACTACCTAGACATTATTTCATGACACCAAAGTGTGTCATCCCATATGTTTACATTGGTAAATGTAATTAACCTATTACTGTTTTCTAActcaatgtatatattcaggGGGAACTCCCTCTCCCCAAGATTTCAAAATCTTGAATGTAATACAAAACACCTTGGGTTACCCTTTCAGGACACAGATTAGCATAGTTTGGTGTCTGTTCCTTATGCACATATGTTATAGGCACTTAACTCATACTACCAGCAGAGCAAGGATTTATAGAAAGctaactttttaatttgtggGAGCTGCAGACACCAAACCAAATATAGTTAGGGAATTCAGCCCTCAATATTCAGTAGGGTACAAATTACAAACAGTAagtaaaaaaatgataaaaaaacaaattaattttttaCGACATCACTTGTTGTGAGTGTTTTATATCAGGTTGATCCCTCTTGCTGTTGTCCTCATTGCCCTATCTATGCAGCACTTCGTGTTCACATCGATTCACTGTGGGTCACGTCACACTGAGAGTCTCCCGGGCCAACATCGGctgcctctctgtgtcagtgctggAGCTCGTGAAAGACACTACAATGTCTTAAATAAACTGAGAGTGCAATCCGATTATAATCAAAACCAAGATGGGCGTTATCAAAATGCTGCTCTCTAGGTGAAGATttcttaatgtttgttttttgttgaccatatgaaataaatatttcttatattgaatatactaattaaaaaaaaaaaacgatttaatTCTGGGTCATAGAGTTTATGTTTGgtgaacatacacacacacattttttattctgttgtcAGCAGTAACAGATATCTTCAAGGAATGTAGAGAAGATGGAGTGTTTTTAGACATTTACAGAATTAAGACTTGGCCCAAGGAAGCAATCAAATCCCTGTCTAAGTGGTATTTATGGTAAATGGCTTATGGCATTGATACTGTTTCTCTGAATGCCTGTTTTTCATATCATGAAGTCTGTAACTAAATTACTTATGTTTGGCCTAAGGATAGGAACATAATTAAACTCTATTGCCTTAAGTGTCCTTAATCATAATGCCACTGAAGCACTTCTGGGTTCAAATTTTAACTACCTAATTTAACTGCACTACTTTCCTACCTAATGCAATGCACTATCTATCGATGTACACACCTTCTAAAGAGTCAAAGTAAATGAAAGATACTACAATTTGCTTTTTCACTGCTTATTGCATTCTGGTGTGACACGGCAATTGATTAATGTCGCGCTCTTTGTACAGGGGAACACAGTTGTTTTGCAACTTTGTTAATGAATACAGTTACTACCTTaacttatgaaaataaaacaatgtagatt

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU5141 True 2475 lncRNA 0.34 1 24043668 24046142

Neighbor

gene id symbol gene type direction distance location
AMCG00003901 NA coding downstream 190728 23847021 ~ 23852940 (-)
AMCG00003899 NA coding downstream 198650 23823777 ~ 23845018 (-)
AMCG00003900 tulp4 coding downstream 256905 23760602 ~ 23786763 (-)
AMCG00003895 NA coding downstream 390113 23642804 ~ 23653555 (-)
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding downstream 683828 23342244 ~ 23359840 (-)
AMCG00003906 NA coding upstream 1012 24047154 ~ 24075283 (-)
AMCG00003904 NA coding upstream 36523 24082665 ~ 24097083 (-)
AMCG00003905 NA coding upstream 52870 24099012 ~ 24103121 (-)
AMCG00003907 NA coding upstream 99801 24145943 ~ 24191342 (-)
AMCG00003908 NA coding upstream 177243 24223385 ~ 24278980 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding downstream 220970 23820690 ~ 23822698 (-)
G4130 NA non-coding downstream 489144 23554276 ~ 23554524 (-)
G4101 NA non-coding downstream 620195 23399861 ~ 23423473 (-)
G4039 NA non-coding downstream 927983 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 1187263 22856026 ~ 22856405 (-)
G4255 NA non-coding upstream 78709 24124851 ~ 24125052 (-)
G4256 NA non-coding upstream 82399 24128541 ~ 24129966 (-)
G4353 NA non-coding upstream 589148 24635290 ~ 24635495 (-)
G4390 NA non-coding upstream 774699 24820841 ~ 24881609 (-)
G4397 NA non-coding upstream 822569 24868711 ~ 24873886 (-)
AMCG00003896 tmem181 other downstream 285872 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 509786 23529519 ~ 23533882 (-)
G3523 NA other downstream 4536915 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 4618302 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4670443 19361818 ~ 19373225 (-)
AMCG00003909 NA other upstream 217765 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 1851792 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 1919278 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 2784212 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 5278599 29324741 ~ 29329115 (-)

Expression


Co-expression Network