G4521 (fig4)


Basic Information

Item Value
gene id G4521
gene name fig4
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25897934 ~ 25901612 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5513
TTTTTGGCCGAGCGGCACTCCGTCTCAGCTGAAGTTCAGCATGACTATCACCTGATCGCAACACATCTATGAGGTCATCCTGTCAGACGAAGTGCCTTGATGAACACACGGATTTATCCTGTACTGTTGTCTTCCTGATACCATCTCTCCACCATGCCCATGTCGGCTCCAGTCATCAGCTGTGTGCAGAAGCTGGTTCTGTACGAAACGAGAGCTagatATTTTCTTGTTGGAAGTAATCATGCACAAAGCAAACACCGTGTTTTGAAAATCGATCGCACGGAGCCCAAGGACTTGGTTATTATTGATGATAAGCATGTGTACAACCAGCAAGAAGTCCGGGAGCTTCTGGGACGCCTGGATCTGGGGAACAGAACTAAGATTGGACAGAAGGGTTCTTCAGGGTTATCAAGAGCAGTATCGGCTTATGGCATCGTTGGT

Function

symbol description
fig4 Predicted to enable phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity. Predicted to be involved in phosphatidylinositol biosynthetic process. Predicted to act upstream of or within several processes, including negative regulation of myelination; nervous system development; and phosphatidylinositol metabolic process. Located in endosome membrane and lipid droplet. Implicated in Charcot-Marie-Tooth disease type 4J; Yunis-Varon syndrome; amyotrophic lateral sclerosis type 11; and bilateral parasagittal parieto-occipital polymicrogyria.

NR:

description
PREDICTED: polyphosphoinositide phosphatase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5513 True 441 TUCP 0.48 4 25897934 25901612

Neighbor

gene id symbol gene type direction distance location
AMCG00003941 fig4 coding downstream 13796 25874147 ~ 25884138 (-)
AMCG00003940 fig4 coding downstream 46545 25848161 ~ 25851389 (-)
AMCG00003942 LOC101067178 coding downstream 78959 25811320 ~ 25818975 (-)
AMCG00003929 cdc40 coding downstream 201395 25660330 ~ 25696539 (-)
AMCG00003928 NA coding downstream 306447 25580771 ~ 25591487 (-)
AMCG00003945 NA coding upstream 105238 26006850 ~ 26015600 (-)
AMCG00003952 NA coding upstream 185135 26086747 ~ 26117524 (-)
AMCG00003951 NA coding upstream 253931 26155543 ~ 26214675 (-)
AMCG00003950 NA coding upstream 323854 26225466 ~ 26257039 (-)
AMCG00003953 nr2e1,LOC107726614,LOC107601200,LOC107726424 coding upstream 379924 26281536 ~ 26289404 (-)
G4455 NA non-coding downstream 430501 25466252 ~ 25467433 (-)
G4415 NA non-coding downstream 829692 25063554 ~ 25068242 (-)
G4390 NA non-coding downstream 1016325 24820841 ~ 24881609 (-)
G4397 NA non-coding downstream 1024048 24868711 ~ 24873886 (-)
G4353 NA non-coding downstream 1262439 24635290 ~ 24635495 (-)
G4602 NA non-coding upstream 375832 26277444 ~ 26279767 (-)
G4624 sec63,LOC106940628 non-coding upstream 458245 26359857 ~ 26365069 (-)
G4660 NA non-coding upstream 632268 26533880 ~ 26586892 (-)
G4665 NA non-coding upstream 657257 26558869 ~ 26561251 (-)
G4727 NA non-coding upstream 856739 26758351 ~ 26758880 (-)
AMCG00003909 NA other downstream 1601688 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 2140138 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 2364052 23529519 ~ 23533882 (-)
G3523 NA other downstream 6391181 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 6472568 19424963 ~ 19425366 (-)
AMCG00003946 NA other upstream 63808 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 928742 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 3423129 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 4283006 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 4372194 30273806 ~ 30276227 (-)

Expression


Co-expression Network