G4592


Basic Information

Item Value
gene id G4592
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26243662 ~ 26244054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5611
CGCTTTCTAACTCCATGGTGTTATAAAACCAATAATACTAACAATTGTAATATGATCAACTCTTTTGGTTTTACCTGCTAAGTGGATTTTCTGATCATAAGGCATCACCCTTATTAAGTAGTGCATGAAGAAACATACCACATTAACTTAAATCCCTACCTGTTTAGATCCCaaaagcagaaattaaaaaataatactactgcctttataattaaagaaagtgttttatttttcagtgtccATGTTGCACCTTGAGAGGGTCTACTCGATTGAACTGAGGAGTCTTCAATCACTTTGTAAAGAAGCACATAACACAATCAAAGGACCTCTCTCTTATGGGAAGGATCACATCATCTCTTTCTATTAGCATAACGGAGCTGTGATCTTTCTGGt

Function

GO:

id name namespace
GO:0051259 protein complex oligomerization biological_process
GO:0051260 protein homooligomerization biological_process
GO:0036038 MKS complex cellular_component
GO:0042995 cell projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0035869 ciliary transition zone cellular_component
GO:0005929 cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5611 True 393 lncRNA 0.57 1 26243662 26244054

Neighbor

gene id symbol gene type direction distance location
AMCG00003947 NA coding upstream 223837 26019544 ~ 26019825 (+)
AMCG00003944 NA coding upstream 278413 25946643 ~ 25965249 (+)
AMCG00003943 NA coding upstream 300615 25939882 ~ 25943047 (+)
AMCG00003937 NA coding upstream 305333 25933027 ~ 25938329 (+)
AMCG00003938 NA coding upstream 316523 25915420 ~ 25927139 (+)
AMCG00003954 NA coding downstream 13372 26257426 ~ 26257668 (+)
AMCG00003949 snx3 coding downstream 28365 26272419 ~ 26279485 (+)
AMCG00003956 NA coding downstream 75713 26319767 ~ 26328027 (+)
AMCG00003955 NA coding downstream 90579 26334633 ~ 26339261 (+)
AMCG00003958 sec63 coding downstream 95794 26339848 ~ 26365099 (+)
G4590 NA non-coding upstream 14410 26228928 ~ 26229252 (+)
G4589 NA non-coding upstream 16162 26225493 ~ 26227500 (+)
G4536 NA non-coding upstream 299310 25944143 ~ 25944352 (+)
G4526 NA non-coding upstream 313982 25929467 ~ 25929680 (+)
G4512 fig4b,fig4 non-coding upstream 355349 25814291 ~ 25888313 (+)
G4593 NA non-coding downstream 193 26244247 ~ 26244637 (+)
G4594 NA non-coding downstream 11735 26255789 ~ 26256106 (+)
G4595 NA non-coding downstream 12727 26256781 ~ 26257025 (+)
G4694 NA non-coding downstream 407231 26651285 ~ 26651567 (+)
G4787 NA non-coding downstream 1037950 27282004 ~ 27282241 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 158540 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 447867 25785173 ~ 25795795 (+)
G4360 NA other upstream 1559742 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 2113770 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 2200777 23838589 ~ 24042885 (+)
AMCG00003962 NA other downstream 338613 26582667 ~ 26586892 (+)
G4831 NA other downstream 1818309 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 2135757 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2210365 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 2324130 28568184 ~ 28585674 (+)

Expression


Co-expression Network