G4624 (sec63,LOC106940628)


Basic Information

Item Value
gene id G4624
gene name sec63,LOC106940628
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26359857 ~ 26365069 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5651
gatttaaatacaaagaatatataatgatatattttccatttacaatgacaattttattgtaaacaaaattgGCAGATACTTTATTATTGGGTAATAGTTCCTATTTGGCCTGTAAGGATTAAAAGACAGTATTATAGCTGAATTATTTAAGTTACTGCAGTTTTAACACAGCATGTTAACTAATGCTACATTCTTGCAgattaataatacttaaatgcaattattttcttctaggtgtaaattttgatttaaacttAGTGGATGTACAGTTTGGTATTTGCATAACTGAACATGCAGCCCTATTTGAATCCTTTTCCTTGTACAGCACAATGTTTATACTGGTTAAAAAGAGACACACAAGGTAATCTATGCTAAACAATTGCTTACAATGTTTAGTTTATGTCTTCCCAACAGaactattaaatacatacatcagtCAGCTATTTTTCTGCAAGAGGAGCTAGTATAACAAGTGATAAAAAACTGAAAGTGGTTAAAAGTAATGTCACAAAAGtaggatttgtattttttgagtgtactgtaaattgtaagtgTGCTGCAATACCAATTTTAGACACTCAAAATCCACACAGCCTGAAGGGTTTTCTGCCATTAATGACAAGGAACCACAAGCAGCTGCTTACAACAGCAAGCACCACAATTTGgccattttctttatattacaGTGACTTTGAAACTTTAGATTTCCATCTCTCTTGCCCCTGGTTTCATAACATCTCTGATGCCAGCTTGAGAGTTAACCAAAACATTACAACAATTAAGAGTTAATAAATGGTCCCATCCTTTTTAGGTGCTGTTCTCAACACAAATATTCCCTTTTCTGCCTgggattattttttgttttaattcagattaGTCCCCTGAATTCATTTTAACCTTTAGGGgaacaaagaataataattaaaaaaaaacactactgtCACTATTCCACCCTAATGAGTCCAGATTAAATTTTCTGcacaaaataattttgtcaGCCCaacatttgtgtgtgaaaaataaGGTGTAGTGTTGGAATAATACAGTAGGATAGAGAACATTCTTTTTCCTTCCCACATTCTACTCATTTGATACCAGATCTGTTTCTCCAGGCCTCCCTTGAATCTTAAAATAGCGAGAATTTAGGATAATGTAACACAAACTGAATTGTACAAAACTGCAATGTGTCCATTCTCCGTCTCAATTAATATGCACAGGTTgaccttttcttctttcttcaaAAGACTCTCTCAGAAAGTAGTCTCCTAGGAAAATCATTATACAGATTAAAGCAAGATGTTTCTAaagcctgaaaaacaaaaggtgcAACTAAAAGCAAATAACGATGTCCCctccaaaaaagaaataatcCAAGTATTTACCCATCctgcctcccccacccccaatccCCCAACAGTGGAATCTACCATTGACTTTCtaaatttaaagcattacaacCCTGTTATATAATAAGGCCTTTGAGATACAGGAGCCAACTGGAATGTACCATATAATACGCCACACTACCTTTCACTTCCAAATAAAAACCATCTCCAAAGTCTtatgtttttagatttgtaGATCATTGTGAGTGACGATCCTAAAAAGCTAGCctgtatatttttattgcattaatGAAACGCACAGCCCAAACTATCTGCAACAcctctaattttaaatgtgcgCAAACACAGAACCAAAGACACAGAGCAGCAGAAGAGAGAATTTCAATTAGTGAAACTGACAGCGATCATAATGTCATACAACAGCAGTCCCGAGATGTTTGATTCAGTAACTCTGTGCCGACATACCATTGCATTAAGGCAAATCGAGTAGAAACACTGTAATGTTGACAGAGTGGGTGGCTGTAGTCGAAtgtcttttaaacatttcacttttaGCTATATAGTCGAGACAAAACATTTGTCAACAGGTTCTCTCCTCATTTGTTTCTGATGAATGAAAGTACTAACAGAAGCACTTAAATGGAACCCACAAATGTGAAAGATGGCCTTCATGATAAACTGTGAAAAAAAGACCAGTCCACTGAGGCAACACCACTGTTCCATGCATCACTGTCTGCTAGTATCTCatgaacaattacaaaaaacaaaaaaaaaatgcttaaaaatctAAAGCCTATTGTATGGGAAATAATGCGACTTCTGGCAGTTTGAACCGAGTCAGGAGAAGAATGCCTTGCCTTAGCGACGGCCGGAGCACCCATTAAGAAAGTGTGCCGTGTTACAAAAGCAACTAAAATCCCAAACTGGAGACCTTTAGGTGCCATCTTAAAGAGATGCAACACTTTCAGAATGACGGCCAGCAGTTTTCCCCCAGTACAACCGAGAGTCCTTGGACATCCagactacaaaataaaatacaacataaaaagtAGTGAGcccctttgtttatttattcaactgTAACAAAATGTGCCTCCCCTCCCCTCATCCCTTTGCCCCGATTCCACACCATAGACACGGCTGCAGCGATCTCCAGTTGTTTAGGCTTTTCAGTTGGCGAGGCAGGGGACTCTGTCATAGGCAGTGCTAGAAAAGAAGAGCTTCAGGCCATCCATGTGTGAGCTGCATTTAATCATACACACACTAACAGCTGAGACTCGAGACCAAGAATAAGTGTCGGGGTACTGGTTCATCTTGcgtctccccccccaccccacaaaaaaaataaaaaagaaacctaGTCGGTGTTGACCTGTGTGCAAGAATGGTTTGATTTAGATTCTGGTTGTTGTTGGTGTTCACCAACGAGATCAGTCTGAGAGCTGGCGGCCGGACGGGAGGCCGGGCTAGTCGTCGTCGTCATCGTCCTCCTCGCTCTCCTCGATGCCATCGCTGTCCTCTTggtcctcctcttcctcctcagtcTCGGGGATGTCCCACTGCGGGTGGTTGTCTATCATGGCCTTGGCCTCATGGACTTCCAGCTTTAATGGCTTTATCTGATCCAACCCCATGTAGGAATCTGATCTCAATATCACTGAATACTGATAATTTCCAGTTTTAGATGGTGCAGGGAATTTCAACTcaacCTCTTCAGTCTCCTTTAGCGTACAGACGTGATAGGGCATTGACACTAAAGTTTGTTCTCTCCTGTCAGCGATGTACAGCCACCACCACTCTTGCTTTTCCTCTGGGAAGTACAAGCTATAAACAGGATGTGTGATCTTTGATTTGGTCTCCAGGAGAGCCCGCTCTCTTCGTTGTATACTCTGCTGCAATGCTTCCCATTCCTCCTCGTTGTCTCCACCCATCTCCTCCACTTCCGTATCGCTCTGCTTGTCGCTCTCGTCGTCCCTCTCACTGGGAGAGTCCTTGGTGACCTCCCCGTCCTCAGACTCGCTGCCCTTGTCGGAGAGCTCATCGTCGTCCTCCTTCGCCAAGGCCGTCACCTCCTGCACGGCAAACCACACCATTTCATCATCGCGCCTGTCTCCAGAAGA
>TU5652
gatttaaatacaaagaatatataatgatatattttccatttacaatgacaattttattgtaaacaaaattgGCAGATACTTTATTATTGGGTAATAGTTCCTATTTGGCCTGTAAGGATTAAAAGACAGTATTATAGCTGAATTATTTAAGTTACTGCAGTTTTAACACAGCATGTTAACTAATGCTACATTCTTGCAgattaataatacttaaatgcaattattttcttctaggtgtaaattttgatttaaacttAGTGGATGTACAGTTTGGTATTTGCATAACTGAACATGCAGCCCTATTTGAATCCTTTTCCTTGTACAGCACAATGTTTATACTGGTTAAAAAGAGACACACAAGGTAATCTATGCTAAACAATTGCTTACAATGTTTAGTTTATGTCTTCCCAACAGaactattaaatacatacatcagtCAGCTATTTTTCTGCAAGAGGAGCTAGTATAACAAGTGATAAAAAACTGAAAGTGGTTAAAAGTAATGTCACAAAAGtaggatttgtattttttgagtgtactgtaaattgtaagtgTGCTGCAATACCAATTTTAGACACTCAAAATCCACACAGCCTGAAGGGTTTTCTGCCATTAATGACAAGGAACCACAAGCAGCTGCTTACAACAGCAAGCACCACAATTTGgccattttctttatattacaGTGACTTTGAAACTTTAGATTTCCATCTCTCTTGCCCCTGGTTTCATAACATCTCTGATGCCAGCTTGAGAGTTAACCAAAACATTACAACAATTAAGAGTTAATAAATGGTCCCATCCTTTTTAGGTGCTGTTCTCAACACAAATATTCCCTTTTCTGCCTgggattattttttgttttaattcagattaGTCCCCTGAATTCATTTTAACCTTTAGGGgaacaaagaataataattaaaaaaaaacactactgtCACTATTCCACCCTAATGAGTCCAGATTAAATTTTCTGcacaaaataattttgtcaGCCCaacatttgtgtgtgaaaaataaGGTGTAGTGTTGGAATAATACAGTAGGATAGAGAACATTCTTTTTCCTTCCCACATTCTACTCATTTGATACCAGATCTGTTTCTCCAGGCCTCCCTTGAATCTTAAAATAGCGAGAATTTAGGATAATGTAACACAAACTGAATTGTACAAAACTGCAATGTGTCCATTCTCCGTCTCAATTAATATGCACAGGTTgaccttttcttctttcttcaaAAGACTCTCTCAGAAAGTAGTCTCCTAGGAAAATCATTATACAGATTAAAGCAAGATGTTTCTAaagcctgaaaaacaaaaggtgcAACTAAAAGCAAATAACGATGTCCCctccaaaaaagaaataatcCAAGTATTTACCCATCctgcctcccccacccccaatccCCCAACAGTGGAATCTACCATTGACTTTCtaaatttaaagcattacaacCCTGTTATATAATAAGGCCTTTGAGATACAGGAGCCAACTGGAATGTACCATATAATACGCCACACTACCTTTCACTTCCAAATAAAAACCATCTCCAAAGTCTtatgtttttagatttgtaGATCATTGTGAGTGACGATCCTAAAAAGCTAGCctgtatatttttattgcattaatGAAACGCACAGCCCAAACTATCTGCAACAcctctaattttaaatgtgcgCAAACACAGAACCAAAGACACAGAGCAGCAGAAGAGAGAATTTCAATTAGTGAAACTGACAGCGATCATAATGTCATACAACAGCAGTCCCGAGATGTTTGATTCAGTAACTCTGTGCCGACATACCATTGCATTAAGGCAAATCGAGTAGAAACACTGTAATGTTGACAGAGTGGGTGGCTGTAGTCGAAtgtcttttaaacatttcacttttaGCTATATAGTCGAGACAAAACATTTGTCAACAGGTTCTCTCCTCATTTGTTTCTGATGAATGAAAGTACTAACAGAAGCACTTAAATGGAACCCACAAATGTGAAAGATGGCCTTCATGATAAACTGTGAAAAAAAGACCAGTCCACTGAGGCAACACCACTGTTCCATGCATCACTGTCTGCTAGTATCTCatgaacaattacaaaaaacaaaaaaaaaatgcttaaaaatctAAAGCCTATTGTATGGGAAATAATGCGACTTCTGGCAGTTTGAACCGAGTCAGGAGAAGAATGCCTTGCCTTAGCGACGGCCGGAGCACCCATTAAGAAAGTGTGCCGTGTTACAAAAGCAACTAAAATCCCAAACTGGAGACCTTTAGGTGCCATCTTAAAGAGATGCAACACTTTCAGAATGACGGCCAGCAGTTTTCCCCCAGTACAACCGAGAGTCCTTGGACATCCagactacaaaataaaatacaacataaaaagtAGTGAGcccctttgtttatttattcaactgTAACAAAATGTGCCTCCCCTCCCCTCATCCCTTTGCCCCGATTCCACACCATAGACACGGCTGCAGCGATCTCCAGTTGTTTAGGCTTTTCAGTTGGCGAGGCAGGGGACTCTGTCATAGGCAGTGCTAGAAAAGAAGAGCTTCAGGCCATCCATGTGTGAGCTGCATTTAATCATACACACACTAACAGCTGAGACTCGAGACCAAGAATAAGTGTCGGGGTACTGGTTCATCTTGcgtctccccccccaccccacaaaaaaaataaaaaagaaacctaGTCGGTGTTGACCTGTGTGCAAGAATGGTTTGATTTAGATTCTGGTTGTTGTTGGTGTTCACCAACGAGATCAGTCTGAGAGCTGGCGGCCGGACGGGAGGCCGGGCTAGTCGTCGTCGTCATCGTCCTCCTCGCTCTCCTCGATGCCATCGCTGTCCTCTTggtcctcctcttcctcctcagtcTCGGGGATGTCCCACTGCGGGTGGTTGTCTATCATGGCCTTGGCCTCATGGACTTCCAGCTTTAATGGCTTTATCTGATCCAACCCCATGTAGGAATCTGATCTCAATATCACTGAATACTGATAATTTCCAGTTTTAGATGGTGCAGGGAATTTCAACTcaacCTCTTCAGTCTCCTTTAGCGTACAGACGTGATAGGGCATTGACACTAAAGTTTGTTCTCTCCTGTCAGCGATGTACAGCCACCACCACTCTTGCTTTTCCTCTGGGAAGTACAAGCTATAAACAGGATGTGTGATCTTTGATTTGGTCTCCAGGAGAGCCCGCTCTCTTCGTTGTATACTCTGCTGCAATGCTTCCCATTCCT

Function

symbol description
sec63 Predicted to enable RNA binding activity and protein transmembrane transporter activity. Acts upstream of or within endoplasmic reticulum unfolded protein response; liver development; and myelination. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of Sec62/Sec63 complex. Used to study fatty liver disease and polycystic liver disease. Human ortholog(s) of this gene implicated in polycystic liver disease. Orthologous to human SEC63 (SEC63 homolog, protein translocation regulator).

NR:

description
translocation protein SEC63 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5651 True 3466 lncRNA 0.36 5 26359857 26365069
TU5652 False 3258 lncRNA 0.39 4 26360416 26365069

Neighbor

gene id symbol gene type direction distance location
AMCG00003953 nr2e1,LOC107726614,LOC107601200,LOC107726424 coding downstream 70453 26281536 ~ 26289404 (-)
AMCG00003950 NA coding downstream 102818 26225466 ~ 26257039 (-)
AMCG00003951 NA coding downstream 145182 26155543 ~ 26214675 (-)
AMCG00003952 NA coding downstream 242333 26086747 ~ 26117524 (-)
AMCG00003945 NA coding downstream 344257 26006850 ~ 26015600 (-)
AMCG00003960 NA coding upstream 60270 26425339 ~ 26446838 (-)
AMCG00003961 NA coding upstream 211067 26576136 ~ 26581454 (-)
AMCG00003965 NA coding upstream 259571 26624640 ~ 26633703 (-)
AMCG00003966 NA coding upstream 286837 26651906 ~ 26683835 (-)
AMCG00003968 NA coding upstream 406225 26771294 ~ 26771916 (-)
G4602 NA non-coding downstream 80090 26277444 ~ 26279767 (-)
G4455 NA non-coding downstream 892424 25466252 ~ 25467433 (-)
G4415 NA non-coding downstream 1291615 25063554 ~ 25068242 (-)
G4390 NA non-coding downstream 1478248 24820841 ~ 24881609 (-)
G4397 NA non-coding downstream 1485971 24868711 ~ 24873886 (-)
G4660 NA non-coding upstream 168811 26533880 ~ 26586892 (-)
G4665 NA non-coding upstream 193800 26558869 ~ 26561251 (-)
G4727 NA non-coding upstream 393282 26758351 ~ 26758880 (-)
G4752 NA non-coding upstream 426089 26791158 ~ 26832411 (-)
G4782 NA non-coding upstream 599691 26964760 ~ 26965399 (-)
AMCG00003946 NA other downstream 361229 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 458245 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 2063611 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 2602061 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 2825975 23529519 ~ 23533882 (-)
AMCG00003967 LOC107095448 other upstream 465285 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 2959672 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 3819549 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 3908737 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 4448712 30813781 ~ 30894824 (-)

Expression


Co-expression Network