G4665


Basic Information

Item Value
gene id G4665
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26558869 ~ 26561251 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5701
ggatttacaaaacaaaacaaaaggatacATTtgtcaatttcaataaaaaatatagtgcatttattttcaacttccactgacacagatatacacagtatacattgcatttttatattttgtgtcgTCTTCATCAGAATTTGGTGACAGCATAGGCAATATTTTCCAAAGCCGATCTGGCCTCTGAGGGAGGGAAGCACTTTATGGCCTCAAGTGCTTTGTTTCCATGGTAACAGCACAAGTCGATCGCAGAGCTCACACCTTTGCCAGCCTTGATTGCTCCCCACAACTGTATAGTCCACTTGTCTCCCC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU5701 True 309 lncRNA 0.40 2 26558869 26561251

Neighbor

gene id symbol gene type direction distance location
AMCG00003960 NA coding downstream 112031 26425339 ~ 26446838 (-)
AMCG00003953 nr2e1,LOC107726614,LOC107601200,LOC107726424 coding downstream 269465 26281536 ~ 26289404 (-)
AMCG00003950 NA coding downstream 301830 26225466 ~ 26257039 (-)
AMCG00003951 NA coding downstream 344194 26155543 ~ 26214675 (-)
AMCG00003952 NA coding downstream 441345 26086747 ~ 26117524 (-)
AMCG00003961 NA coding upstream 14885 26576136 ~ 26581454 (-)
AMCG00003965 NA coding upstream 63389 26624640 ~ 26633703 (-)
AMCG00003966 NA coding upstream 90655 26651906 ~ 26683835 (-)
AMCG00003968 NA coding upstream 210043 26771294 ~ 26771916 (-)
AMCG00003970 NA coding upstream 378787 26940038 ~ 26957628 (-)
G4624 sec63,LOC106940628 non-coding downstream 193800 26359857 ~ 26365069 (-)
G4602 NA non-coding downstream 279102 26277444 ~ 26279767 (-)
G4455 NA non-coding downstream 1091436 25466252 ~ 25467433 (-)
G4415 NA non-coding downstream 1490627 25063554 ~ 25068242 (-)
G4397 NA non-coding downstream 1684983 24868711 ~ 24873886 (-)
G4727 NA non-coding upstream 197100 26758351 ~ 26758880 (-)
G4752 NA non-coding upstream 229907 26791158 ~ 26832411 (-)
G4782 NA non-coding upstream 403509 26964760 ~ 26965399 (-)
G4829 NA non-coding upstream 1488288 28049539 ~ 28058411 (-)
G4838 NA non-coding upstream 1543358 28104609 ~ 28104980 (-)
AMCG00003946 NA other downstream 560241 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 657257 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 2262623 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 2801073 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 3024987 23529519 ~ 23533882 (-)
AMCG00003967 LOC107095448 other upstream 269103 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 2763490 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 3623367 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 3712555 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 4252530 30813781 ~ 30894824 (-)

Expression


Co-expression Network