G4900


Basic Information

Item Value
gene id G4900
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28367999 ~ 28369982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU5988
tcagtagatacaatacatgttttatttttaaaacattgcaacagtgtaataaatatataattgcttATCCCACAGAGCATGGAACATTTTTGGTCTCACAAAGAACACGTATGGAGTACTACATGGCTTACTTTGCTATAGTGTTTCatcagtgtttttatatatatatatatatatgcaataatCAGACAAGGcttacatttttagaaagaaaatatgatgGCAGTTCCAGACTTGAGCTTTTGcttggattttttattttatttactttcttaCATTTCATAGTTGATGTGAACTTCGAGAATGGTAAACACATGGTCAATCAATCATTTAGTGAAAGACATGACCCAATAATAGCATACATGTTGTTTAGtcataaataaaccacaatgcCTAAAACAGGACTGGGACAGATGGCCTCCGGTGGAAGGATATGACATTCTATTAGAACATATTTAATGGTAAATAACAGCCACTGTGATATATATGCAGTCTTCTATAGAAATACATTGAGAAAAAGACGCTGTTAGCAGAGGAATTCATcatgctttaaataaattaacacaccTGAGTTTTTCCCTACCCTATCGATGCGAGTGGTTCATATGCATCAATACACAAGTTAATTTTCCAAGCAGCTGTGAATGTTAGCAGAAGAACAGAACCAGCACTGGTGCACTGGCAGACAGTACATTCCACAGACAACAACAACCATTTAGATCTCACAATTCATTTTCAGACTGTTACCTTCTCACACGCTCAAAGTTTTATACATGAAGAAGGTTGATGAAGTGAAAAATAACACTCTGAATCACTTGCACTAAATTCTTTGTGAATGACTGGTCTCATCCGTCTCTACAATGCTCCAAGCCTAAGGCATTTAGTACTGCACTTAATGCAGGGAAAGACTTTGATTGTAGagcaacatttgtatttaaaacaatgataattaaataatcctAAAGGAAACATTGCATTCCTGACAATCCAGTGCcagcactgaaagaaaaaactaagaaaattcaaacagaaaactaaacaaacaaaaataatttccttatatgaTAAgggaatacatacatttcatttacaagttttgtttattaatatataaaagaaaaacaaaatatctgaaaaaatacacacacaaacataaaaattacacatacaaacacaaacaaacatttggtcaaaatataaatggtttgtgcattgattttcttttgatgGGACGGATTGATCAAGTCTACAATGTTTTCTTAGAATTACTAAGTGATGCATGAAAAAGTAAAAGAGAATACACGATTTCTTGTGTACAAAATGAAGCACATGACGTGGTGAAACACTATCCTGATTTCTCCGTGTCTTCAGTTTGGCCCAACCACCTATTGAAATAAACCAGAAAAACGAGAACAAACAAGGAGGCGACAAACTCCCCCATCAGCACTTCCTTTGGCCAGCTTGTAGTGGTTTGGGACTTGTACAGCCGCGAAGTTTGGCCAGCATGCTGTGGCACAGGAAGCCTCACAAGCACTGCTTTGTGGTCTAAGGCAGCCAGCAGTGTGAATGTAACCAACCAGTCCTCTCAACTGTTGGCCCTTATGTAAACTATGTACATAACTAAGGCAACTCATTACTCCAGTCCTCGGCTTTTTTACTCGAAGGTCCATACTTCAAGCTCTTGAATGATAAAGTCTTCCTTCTTGGACAGCGGTTCGTTGTGGAAAGTGTGGCAGGGATAGCTGGAGCCGTGGTACAAGTCTGCATCCATCCACAGGCCAAAGTGTCCCCTAGagacacaaaatgcttcatATTAGAAGAATGAATTGCACAGTATGTCGTTTCATCACATGACCACACCATTTCAACAGGGACACCTTTTCTACTGTACTTTCCCTCATACCCATACAATTCATTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5988 True 1921 lncRNA 0.59 2 28367999 28369982

Neighbor

gene id symbol gene type direction distance location
AMCG00003986 atg5 coding downstream 37397 28272497 ~ 28330602 (-)
AMCG00003984 prep,LOC100698444,LOC106571155 coding downstream 211065 28127912 ~ 28156934 (-)
AMCG00003981 NA coding downstream 241455 28107472 ~ 28126544 (-)
AMCG00003978 hace1 coding downstream 326642 27998833 ~ 28041357 (-)
AMCG00003979 NA coding downstream 732635 27633080 ~ 27635364 (-)
AMCG00003987 NA coding upstream 8259 28378241 ~ 28378729 (-)
AMCG00003996 NA coding upstream 223041 28593023 ~ 28598618 (-)
AMCG00003997 LOC105908893 coding upstream 239963 28609945 ~ 28634231 (-)
AMCG00003995 elovl4,LOC108434897,LOC105908900,LOC103388604 coding upstream 329398 28699380 ~ 28715591 (-)
AMCG00004002 fam46a,fam46aa,LOC100698511,LOC107378903 coding upstream 586311 28956293 ~ 28958298 (-)
G4838 NA non-coding downstream 263019 28104609 ~ 28104980 (-)
G4829 NA non-coding downstream 309588 28049539 ~ 28058411 (-)
G4782 NA non-coding downstream 1402600 26964760 ~ 26965399 (-)
G4752 NA non-coding downstream 1535588 26791158 ~ 26832411 (-)
G4727 NA non-coding downstream 1609119 26758351 ~ 26758880 (-)
G4921 NA non-coding upstream 99592 28469574 ~ 28469852 (-)
G4922 NA non-coding upstream 100208 28470190 ~ 28470417 (-)
G4923 NA non-coding upstream 101580 28471562 ~ 28471769 (-)
G4966 NA non-coding upstream 328493 28698475 ~ 28699024 (-)
G4982 NA non-coding upstream 522700 28892682 ~ 28893032 (-)
AMCG00003967 LOC107095448 other downstream 1498421 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 2369371 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 2466387 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4071753 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 4610203 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 954759 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1814636 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1903824 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 2443799 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 2599697 30969679 ~ 30973496 (-)

Expression


Co-expression Network