G5005


Basic Information

Item Value
gene id G5005
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28952553 ~ 28953065 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6107
cttttatttaaaaaaatccaaatattggataatgtaaacaaaatgtacaatcttTCCCCTCTGCCAATAACACAAATTGAAGCGGTTAAACGTCTGTGtaccattttttgtttgtttgttttgttttatatctcACCAAGACCAAACTTTCAGTTACTACCTCTCCAGCTCAAGCAAACCAATCCAGGAATAGTTTGCTGCTGCAAAAAGTTATCTGAGAAGCCAGTGTTTATATGGTGAGGGTAGGAAAAGCAAATGTACAGAGCCTCCTTCATATTGCAAGGCCTTGCAAATAGTCACCCAAGGTTTCTAAGTTAGACAGTTTTTCATATTGTTTGACCTCCTACAGAgcaatcattaaaacaaaaacaagcaaaacaaaataaaacatatatactatattcatacatgtaatgaaatacatattactTAAGGGAATATCAACACCTCATATTTAGGAATATCAATCAAATTGAAGTCAACTTAGTCAATGGTGTGGTTATTACTTTagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6107 True 513 lncRNA 0.64 1 28952553 28953065

Neighbor

gene id symbol gene type direction distance location
AMCG00003999 NA coding upstream 200555 28731909 ~ 28751998 (+)
AMCG00003998 LOC105908890,LOC105419921 coding upstream 221520 28717782 ~ 28731033 (+)
AMCG00003994 NA coding upstream 253786 28689888 ~ 28698767 (+)
AMCG00003992 rnf146,LOC107735261 coding upstream 360960 28587831 ~ 28591593 (+)
AMCG00003989 NA coding upstream 573380 28373146 ~ 28379173 (+)
AMCG00004003 NA coding downstream 129028 29082093 ~ 29108404 (+)
AMCG00004009 NA coding downstream 189697 29142762 ~ 29184704 (+)
AMCG00004007 me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 coding downstream 306895 29259960 ~ 29265240 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding downstream 352139 29305204 ~ 29321613 (+)
AMCG00004010 NA coding downstream 427518 29380583 ~ 29391128 (+)
G4981 NA non-coding upstream 59522 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 483609 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 846846 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 1174894 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 1176111 27721460 ~ 27776442 (+)
G5085 NA non-coding downstream 401456 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 731162 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 744602 29697667 ~ 29699224 (+)
G5185 NA non-coding downstream 1155776 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 1169030 30122095 ~ 30123181 (+)
AMCG00003993 NA other upstream 268572 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 366879 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 486907 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 552812 28379811 ~ 28399741 (+)
G4831 NA other upstream 849342 28062363 ~ 28103211 (+)
AMCG00004011 ccnc other downstream 574349 29527414 ~ 29541358 (+)
G5245 NA other downstream 1318145 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1343802 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1934930 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 3447340 32400405 ~ 32402383 (+)

Expression


Co-expression Network