G5032


Basic Information

Item Value
gene id G5032
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29007691 ~ 29010809 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6134
GAATCGGCTACCCTAGGCTTTAATGACTATGACAATCATTTTGATATATggaacactatatatatatatatatattgtgtatacattttacagacatATACCTGTCTAGTGTATAACAACACTGAAACATAgtaaatattgtgtattgtatttgctTAGATCTGGTTGACCTCATATTCATGACAAAAAAGGAGAAGGTCTAGATCCCCATTTGTTGCAGATTTGCAATTTGTGAGATTCTGTAGTGATCctgttttattcatattattaatttttttaaatagaaatgatTTTTACATACTCATTTCAGACCTAACTAAAATGAGACGTATATATTCAAAACCTAGAACAAAAAACCACTAAAGCCCACTTTTAAAAGGAACAGATTCCATTTGACTGAATAACCTTATCTGATTCTTGAAATTATTGTGTTcaattattttgcaattttCTTGCTGAGCTGAAACAATTCTAAGTAATGTCCCAGAGCCTTTTATGCTAGGTCTCACTGACCACTTTTATGCAGCACAGACAGCTCTCTGTGGAAAACTCATTTCTAACCTTGTCTTTTGCCTGAAGCCACAACATTAATACTTTCAAGTTTCTTTTTGAGTTTTTGGGGCTTTAGCAGAAATGCATATATGCTTCATTTCACCAGACAGTTTTCATGAagaatttattttcatgaagtaaaaacaaaagaaacaaaacaaaaacaagagtgTTTACCATCGGAAATGCAAACTCCTTTGATCATAAATTTGGATATGTTGTTAgaaaatcaaaaatacattaaaaaatattcataacTGCTGCACATACAGAACATGACATTCATGGTTCTGGACATCATGAAATATGTCTAATGTCTTCTTAGAtacaaaaacttaaaacagTTAATGGGAAGAGTGGAAAAGGAAGATACTGCATTTTAcatatgataaatatttattaagacACTGTATAGTATACTTTAGAGGAGTATTATGAAAAATCTGTACAGTCTTTGTAATTGTGTGGTATGAAAAGAAATAGATTTTCCAATGGTCTACAGTTTAAAGTCCTTTGAAAGGGCCCCCAGTACTCTAAGCCCTGTATCATGCAGCATTGCACAACATCAAAAGATGACAAAACACATCAGTGAACATCACATCATATGAGCACATGGTGGCAAGTTCCCAGCATGAACTAACTAAAAGTCTTTACTGTTAAAGAGGCTGGTTTCTATTAAGAAGGGCAAGCACAGAGCTAAACTTCTTTTTACTAGAGGATTTCATGCATAGCTACAAAAAGTCACCATGTCTTGTTATGGACATGTTTTCCACCTTTCAAACGTCAGAATTCAGACTTAAATTTGTTAACCTTGGGTCAGTGTTGATTTCATATCTGTAATGATATCCTTCCATATGATCTCTGCACGCATCTCGGATGTTGTAAAGCCACTTTTTGATGCCCTTCCTGTTCAGGTATAGCACGAGCAGAAAAATAACCCCAATCAGGGCTAGTACAATCCCCAGAAAGACATATGAAGTTTGCAGCACACTCTTCATGTCTTCAGAGAAAATGCAATGGAGCTGagaaacattcattttcagcaACCTGGTGGTCTTCAGGTTGTCGGGAAAAGCACAGAGTAGGTCTGTCTTATCAGCCACAGCTTCTGTCTTCTGTAGCCAAATGACAAGATCTTCAATATTACAATCGCAGTCCCAAGTGTTGTCTGCTAGGTAGACTTGTATGCCTGGATGGAGGTCAAAGTCACTTAAAGTGGCATTCGTGAGCTGCTTCAAAGAGTTTTCTCTCAAGTCTAACTTCTTCAGTTGCAGGTTTTTAAAAGTTCCACCTTTTATGTTGATGATTGAGTTGTTCCTTAAGTAGAGGAACTTGAGGTTTGGCAGTTTTGATAAGGTCTCCTCTGTTACATAAATCAAGTCATTATCTGACAGGTTCAGTGTATCTAAGTTGAGCAAAGATCCATTTTGAACTAGGTCTGAAATTCCTTTAATCTGCTTTGTGTATGAGCTATTGAACACAGAACTGCTCAGATTGAATTCCTGCAAGAAAGTGTTGGAGCTGAAAACTTCAGAATTTAACCTGGAAATCCTGTTGTTACTCAAGTCCAGATGTCGGAGGCTTGGCATGTTGGTAAATACTTTGGGGTCTATTAGCTCAATTTTATTCCCACTGAGGGTCAGGTTATTCAGCTGCTCCAGTGTTTGAGGAAAGGAATCTGCTGTAAGATTAGAGATGTTATTTCCCGTAATGAATAGGGTCTTCACATTTGGAGGTAAGGGGTAGGGAATAGCAGAGAGGTTggtatttacacattttacaattgtCGTCTTGCCAGAATCCACACATCTGCATTTGTCTGGGCAGAGGCTTGCCTGAGAGGTAGCTAAAACCAGGACATGGAGGAAAACAGCTAACCCCAGCCTCAGATGATTGAGCTTCTTCTGATTCGGAATGatcttaatataaaacaaagagtCGACCACAAGCATTTTCTTGAACTGCTTCACAAATATCGTATTTGTCAGAGATCGGAAAAGTTTGAGATAACGTGGTCAGTGTGACAGATGTGGTTGTGAAAGGCTTTTTGAATCTGCTTACAACAACAGAGCGAATGTCTTGGATTTCATGTGTAAAAGTTGTTTCGTACCTTTTCTTTTTGGCTTCACACGGAAAACAGTGTTTCGGCGCAATCCACTCACTCCACTTCTGAATTGCGTAGTACAACTTCCTTCTGTTGGTCCTTCATCACGCAgatatgcaattaaaatagGCGTGCATTTCAATGgttttgcacagaaaaaaagtCCATCAAACGACTCGCATGCATGTGTCGGGTCTAATCCTTTCTTCTTTCCTGACTTATGGGTGGGTTTCTCAGACGGTGTCCTGTTGCACAGATCCTTTGATCTCTCTCCGTACAGTTCTTCACAACCACAACTGCAACGAAACAGCAGCTAACGTAGATAAAAGTTGAACATACCAAAGCAATACATATGTATGTTACCATAAATGTGTAGGtaggaaatataaagaaacGTTTTGCATATACAGTCAAATACAATGAAGGCTAACCCGAAGCTTTAGCAACAGCTCCTCTACTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6134 True 3119 lncRNA 0.62 1 29007691 29010809

Neighbor

gene id symbol gene type direction distance location
AMCG00004000 LOC104961995 coding downstream 5187 28979027 ~ 29002504 (-)
AMCG00004002 fam46a,fam46aa,LOC100698511,LOC107378903 coding downstream 49393 28956293 ~ 28958298 (-)
AMCG00003995 elovl4,LOC108434897,LOC105908900,LOC103388604 coding downstream 292100 28699380 ~ 28715591 (-)
AMCG00003997 LOC105908893 coding downstream 373460 28609945 ~ 28634231 (-)
AMCG00003996 NA coding downstream 409073 28593023 ~ 28598618 (-)
AMCG00004001 NA coding upstream 35322 29046131 ~ 29081592 (-)
AMCG00004004 LOC100304755 coding upstream 98136 29108945 ~ 29118705 (-)
AMCG00004005 NA coding upstream 179871 29190680 ~ 29197175 (-)
AMCG00004018 prdm13,LOC106583971,LOC106605027 coding upstream 490036 29500845 ~ 29506998 (-)
AMCG00004021 NA coding upstream 502201 29513010 ~ 29526510 (-)
G5012 NA non-coding downstream 32424 28974978 ~ 28975267 (-)
G4982 NA non-coding downstream 114659 28892682 ~ 28893032 (-)
G4966 NA non-coding downstream 308667 28698475 ~ 28699024 (-)
G4923 NA non-coding downstream 535922 28471562 ~ 28471769 (-)
G4922 NA non-coding downstream 537274 28470190 ~ 28470417 (-)
G5076 NA non-coding upstream 172283 29183092 ~ 29269921 (-)
G5181 NA non-coding upstream 1091636 30102445 ~ 30102654 (-)
G5194 NA non-coding upstream 1101574 30112383 ~ 30115011 (-)
G5269 NA non-coding upstream 1527127 30537936 ~ 30538437 (-)
G5273 NA non-coding upstream 1542168 30552977 ~ 30553218 (-)
AMCG00003967 LOC107095448 other downstream 2138113 26830354 ~ 26869578 (-)
AMCG00003946 NA other downstream 3009063 25965420 ~ 25998628 (-)
G4521 fig4 other downstream 3106079 25897934 ~ 25901612 (-)
AMCG00003909 NA other downstream 4711445 24263907 ~ 24296246 (-)
AMCG00003896 tmem181 other downstream 5249895 23740585 ~ 23757796 (-)
AMCG00004006 NA other upstream 313932 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 1173809 30184618 ~ 30220135 (-)
AMCG00004041 NA other upstream 1262997 30273806 ~ 30276227 (-)
AMCG00004052 NA other upstream 1802972 30813781 ~ 30894824 (-)
AMCG00004060 NA other upstream 1958870 30969679 ~ 30973496 (-)

Expression


Co-expression Network