G5198


Basic Information

Item Value
gene id G5198
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30145855 ~ 30146557 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU6362
GGCAGTAGAGGGAGTCCTttcacaagaagaaaaacaaGCATGTCTTCAAAACTCAAGAATTTTACATGCAGAGAAGATTCCctgaactaaaaacaaatttatttttaaatctacataAAAACGTTTATATGCTGTGTATAGATGTACATGTCTTGTAGATatgaatttcaattattttaaagtgtttatatttAAGTAATAAATTCTGACTTTGAGTGAATTTCTGATGGTGAATATATTTTTAGGTTCCAGCTTGGAAATATGCTGTGTGCCAAATGTTTGAGCTGTGCATGAGTTCAGTACACTAGcttgaatataaaatacattgggTACTATTCAGAAATTTCCCAAAAAAGATCTAGAGTAAAATCCTTCATTTTGTTCTAGTAGATTGCATAGAATTTCTCGTCTTGTGCCACTGTGAATATGTTTCCAGTCCCCAACGTTCCCTGAAAGATAATCATAGGTTTGaaacaaaattatga

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU6362 True 485 lncRNA 0.32 2 30145855 30146557

Neighbor

gene id symbol gene type direction distance location
AMCG00004026 NA coding upstream 7911 30131236 ~ 30137944 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding upstream 30886 30111086 ~ 30114969 (+)
AMCG00004027 NA coding upstream 48135 30094302 ~ 30097720 (+)
AMCG00004023 NA coding upstream 147171 29983613 ~ 29998684 (+)
AMCG00004013 NA coding upstream 464261 29663803 ~ 29681594 (+)
AMCG00004025 NA coding downstream 10805 30157362 ~ 30167872 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding downstream 54631 30201188 ~ 30202790 (+)
AMCG00004030 NA coding downstream 80076 30226633 ~ 30229627 (+)
AMCG00004037 NA coding downstream 107813 30254370 ~ 30255135 (+)
AMCG00004028 cmtr1,LOC107682822 coding downstream 111915 30258472 ~ 30270198 (+)
G5191 NA non-coding upstream 22674 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 36815 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 446631 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 460312 29684227 ~ 29685543 (+)
G5085 NA non-coding upstream 784176 29354521 ~ 29361679 (+)
G5248 NA non-coding downstream 128551 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 398730 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 406420 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 594007 30740564 ~ 30740873 (+)
G5297 NA non-coding downstream 631490 30778047 ~ 30778270 (+)
AMCG00004011 ccnc other upstream 604497 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1461874 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1560181 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1680209 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1746114 28379811 ~ 28399741 (+)
G5245 NA other downstream 124653 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 150310 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 741438 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2253848 32400405 ~ 32402383 (+)
G5642 NA other downstream 2983563 33130120 ~ 33131186 (+)

Expression


Co-expression Network